RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 FGF5P12034 268 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 TDGF1P13385 188 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 A0A0G2JMM0 328 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 A0A1W2PPB8 328 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 A0A1W2PRS3 328 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 KIR3DP1A8MWS1 328 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 C1orf174Q8IYL3 243 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 ZNF414Q96IQ9 312 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 NPFFR1Q9GZQ6 430 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 ALX4Q9H161 411 aaPredicted RBP11.63□□□□□ -0.55
COL4A1-201ENST00000375820 STRCQ7RTU9 1775 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 ZNF146Q15072 292 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 CLPPQ16740 277 aaPredicted RBP11.63□□□□□ -0.55
COL4A1-201ENST00000375820 LEMD1Q68G75 181 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 ZNF646O15015 1829 aaPredicted RBP11.63□□□□□ -0.55
COL4A1-201ENST00000375820 ZNF815PA8K554 130 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 HBBP68871 147 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 KIR3DL3Q8N743 410 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 TEX45Q8NA69 505 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 PMCHL2Q9BQD1 86 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 PKIBQ9C010 78 aa11.63□□□□□ -0.55
COL4A1-201ENST00000375820 OR5P3Q8WZ94 311 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 PRELID3AQ96N28 172 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 CKAP5Q14008 2032 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 BSPH1Q075Z2 132 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 ZNF600Q6ZNG1 722 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 SCGB3A1Q96QR1 104 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 JKAMPQ9P055 326 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 PEX7O00628 323 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 ZP1P60852 638 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 TMEM186Q96B77 213 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 IGHV4-39P01824 125 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 CDX1P47902 265 aaPredicted RBP11.62□□□□□ -0.55
COL4A1-201ENST00000375820 TRGV2A0A075B6R0 118 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 C1QTNF9BB2RNN3 333 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 CELA3BP08861 270 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 ASIPP42127 132 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 GNG5P63218 68 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 BEND2Q8NDZ0 799 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 CLDND2Q8NHS1 167 aa11.62□□□□□ -0.55
COL4A1-201ENST00000375820 TRBV5-7A0A0A0MS05 114 aa11.61□□□□□ -0.55
COL4A1-201ENST00000375820 NPIPB4C9JG80 1138 aa11.61□□□□□ -0.55
COL4A1-201ENST00000375820 ZNF729A6NN14 1252 aaPredicted RBP11.61□□□□□ -0.55
COL4A1-201ENST00000375820 ATP5G3P48201 142 aa11.61□□□□□ -0.55
COL4A1-201ENST00000375820 DNM1P46Q6ZS02 220 aa11.61□□□□□ -0.55
COL4A1-201ENST00000375820 REC114Q7Z4M0 266 aa11.61□□□□□ -0.55
COL4A1-201ENST00000375820 C17orf98A8MV24 154 aa11.61□□□□□ -0.55
COL4A1-201ENST00000375820 MRPS16Q9Y3D3 137 aaKnown RBP11.61□□□□□ -0.55
COL4A1-201ENST00000375820 MPTX1A8MV57 137 aa11.61□□□□□ -0.55
COL4A1-201ENST00000375820 C3orf36Q3SXR2 165 aa11.61□□□□□ -0.55
COL4A1-201ENST00000375820 TRBV7-9A0A0J9YWB2 115 aa11.61□□□□□ -0.55
COL4A1-201ENST00000375820 A0A0U1RRA0 63 aa11.61□□□□□ -0.55
COL4A1-201ENST00000375820 NDUFA2O43678 99 aa11.61□□□□□ -0.55
COL4A1-201ENST00000375820 SPTBP11277 2137 aa11.61□□□□□ -0.55
COL4A1-201ENST00000375820 NPCDR1Q9BY65 106 aa11.61□□□□□ -0.55
COL4A1-201ENST00000375820 TMEM106BQ9NUM4 274 aa11.61□□□□□ -0.55
COL4A1-201ENST00000375820 IGKV1D-43A0A0B4J1Z2 117 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 OR11H12B2RN74 326 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 ZCCHC24Q8N2G6 241 aaKnown RBP11.6□□□□□ -0.55
COL4A1-201ENST00000375820 OR11H1Q8NG94 326 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 OR11H2Q8NH07 326 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 YAE1D1Q9NRH1 226 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 SEMA5BQ9P283 1151 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 IGHV3-64A0A075B6Q5 118 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 SPAG8Q99932 426 aaPredicted RBP11.6□□□□□ -0.55
COL4A1-201ENST00000375820 SVILO95425 2214 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 SCN8AQ9UQD0 1980 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 LRP5O75197 1615 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 DANCRP0C864 163 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 PPIFP30405 207 aaKnown RBP11.6□□□□□ -0.55
COL4A1-201ENST00000375820 PTGDSP41222 190 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 ALKBH7Q9BT30 221 aaPredicted RBP11.6□□□□□ -0.55
COL4A1-201ENST00000375820 PPP1R27Q86WC6 154 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 DPRXA6NFQ7 191 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 C2orf68Q2NKX9 166 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 MIR17HGQ75NE6 70 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 SMIM8Q96KF7 97 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 GGACTQ9BVM4 153 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 EGR4Q05215 589 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 ACP7Q6ZNF0 438 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 OR13A1Q8NGR1 328 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 SFXN3Q9BWM7 321 aa11.6□□□□□ -0.55
COL4A1-201ENST00000375820 MRPL20Q9BYC9 149 aaKnown RBP11.6□□□□□ -0.55
COL4A1-201ENST00000375820 TMEM54Q969K7 222 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 HIST1H2BAQ96A08 127 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 DICER1Q9UPY3 1922 aaKnown RBP11.59□□□□□ -0.55
COL4A1-201ENST00000375820 NBEAP1P0C6P0 100 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 APOBEC3AP31941 199 aaPredicted RBP11.59□□□□□ -0.55
COL4A1-201ENST00000375820 C2orf88Q9BSF0 95 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 TDRD15B5MCY1 1934 aaKnown RBP11.59□□□□□ -0.55
COL4A1-201ENST00000375820 NPIPB8E9PQR5 432 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 NPIPB9F8W1W9 429 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 NPIPB7O75200 414 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 FOXH1O75593 365 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 MALP21145 153 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 TNFSF10P50591 281 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 C1orf100Q5SVJ3 147 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 POC1AQ8NBT0 407 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 C7orf69Q9H7B7 122 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 PLSCR2Q9NRY7 297 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms