RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 Q6ZRG5 221 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 HSD17B13Q7Z5P4 300 aaPredicted RBP11.1□□□□□ -0.63
PTPRF-202ENST00000372405 THNSL2Q86YJ6 484 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 EIF4E3Q8N5X7 224 aaKnown RBP11.1□□□□□ -0.63
PTPRF-202ENST00000372405 OR2G3Q8NGZ4 309 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 TMEM167AQ8TBQ9 72 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 FAM168AQ92567 244 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 RPEQ96AT9 228 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 RSG1Q9BU20 258 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 KPTNQ9Y664 436 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 A0A1W2PRD5 423 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 A0A1W2PRF3 423 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 A0A1W2PRM7 423 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 PRSS46E5RG02 174 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 E7EUB6 86 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 I3L521 148 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 HOXB4P17483 251 aaPredicted RBP11.1□□□□□ -0.63
PTPRF-202ENST00000372405 CNTFRP26992 372 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 COL8A1P27658 744 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 HTR1DP28221 377 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 HOXA1P49639 335 aaPredicted RBP11.1□□□□□ -0.63
PTPRF-202ENST00000372405 PRCDQ00LT1 54 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 LRRC75BQ2VPJ9 315 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 BTNL8Q6UX41 500 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 MOB3BQ86TA1 216 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 HIPK2Q9H2X6 1198 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 POLQO75417 2590 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 NAV3Q8IVL0 2385 aa11.09□□□□□ -0.63
PTPRF-202ENST00000372405 PTPN13Q12923 2485 aa11.09□□□□□ -0.63
PTPRF-202ENST00000372405 UBE2L5PA0A1B0GUS4 154 aa11.09□□□□□ -0.63
PTPRF-202ENST00000372405 SLC25A17O43808 307 aa11.09□□□□□ -0.63
PTPRF-202ENST00000372405 IFNA10P01566 189 aa11.09□□□□□ -0.63
PTPRF-202ENST00000372405 IFNA5P01569 189 aa11.09□□□□□ -0.63
PTPRF-202ENST00000372405 PJVKQ0ZLH3 352 aa11.09□□□□□ -0.63
PTPRF-202ENST00000372405 OR10P1Q8NGE3 313 aa11.09□□□□□ -0.63
PTPRF-202ENST00000372405 LYPD6BQ8NI32 183 aa11.09□□□□□ -0.63
PTPRF-202ENST00000372405 GNPNAT1Q96EK6 184 aaPredicted RBP11.09□□□□□ -0.63
PTPRF-202ENST00000372405 PERPQ96FX8 193 aa11.09□□□□□ -0.63
PTPRF-202ENST00000372405 PIMREGQ9BSJ6 248 aa11.09□□□□□ -0.63
PTPRF-202ENST00000372405 HINT2Q9BX68 163 aa11.09□□□□□ -0.63
PTPRF-202ENST00000372405 WDR61Q9GZS3 305 aaKnown RBP11.09□□□□□ -0.63
PTPRF-202ENST00000372405 HRH4Q9H3N8 390 aa11.09□□□□□ -0.63
PTPRF-202ENST00000372405 ZNF430Q9H8G1 570 aaPredicted RBP11.09□□□□□ -0.63
PTPRF-202ENST00000372405 PARP11Q9NR21 331 aa11.09□□□□□ -0.63
PTPRF-202ENST00000372405 DPM3Q9P2X0 92 aa11.09□□□□□ -0.63
PTPRF-202ENST00000372405 IGHV4-30-2A0A087WSY4 118 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 CGB1A6NKQ9 187 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 ANKRD17O75179 2603 aaKnown RBP11.08□□□□□ -0.64
PTPRF-202ENST00000372405 LY86O95711 162 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 USF1P22415 310 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-202ENST00000372405 RPL8P62917 257 aaKnown RBP11.08□□□□□ -0.64
PTPRF-202ENST00000372405 VWC2Q2TAL6 325 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 OR5B3Q8NH48 314 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 TBX15Q96SF7 602 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 PARD6GQ9BYG4 376 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-202ENST00000372405 NDUFA4L2Q9NRX3 87 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 HILPDAQ9Y5L2 63 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 A0A1B0GW64 132 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 TIMM23O14925 209 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 CRYGBP07316 175 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 MDKP21741 143 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-202ENST00000372405 LGALS7P47929 136 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 BLOC1S1P78537 153 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 FBLN7Q53RD9 439 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 C10orf55Q5SWW7 151 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 DYNAPQ8N1N2 210 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 OR10W1Q8NGF6 305 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 OR4A5Q8NH83 315 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 VSTM2AQ8TAG5 236 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 C17orf50Q8WW18 174 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 CFHR4Q92496 578 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 MARC2Q969Z3 335 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 PINX1Q96BK5 328 aaKnown RBP11.08□□□□□ -0.64
PTPRF-202ENST00000372405 CLCC1Q96S66 551 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 TMEM147Q9BVK8 224 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 LPAR2Q9HBW0 351 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 POLR3KQ9Y2Y1 108 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-202ENST00000372405 FBXO7Q9Y3I1 522 aa11.08□□□□□ -0.64
PTPRF-202ENST00000372405 NDUFS8O00217 210 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 OR8U8P0C7N1 319 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 PAX1P15863 534 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 RAB5CP51148 216 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 SRSF3P84103 164 aaKnown RBP11.07□□□□□ -0.64
PTPRF-202ENST00000372405 ATP6V1FQ16864 119 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 SLC25A24Q6NUK1 477 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 CLEC2AQ6UVW9 174 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 SCGB1C1Q8TD33 95 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 TAF15Q92804 592 aaKnown RBP eCLIP11.07□□□□□ -0.64
PTPRF-202ENST00000372405 PLEKHA3Q9HB20 300 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 UQCC1Q9NVA1 299 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 FKBP11Q9NYL4 201 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 NBPF19A0A087WUL8 3843 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 CSMD1Q96PZ7 3565 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 FOXH1O75593 365 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 TOX4O94842 621 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 VENTXO95231 258 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 CA2P00918 260 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 PRH1P02810 166 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 CAMLGP49069 296 aa11.07□□□□□ -0.64
PTPRF-202ENST00000372405 KRTAP10-9P60411 292 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms