RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 AREGP15514 252 aa16.58■□□□□ 0.24
CCDC88B-202ENST00000356786 GFRA1P56159 465 aa16.58■□□□□ 0.24
CCDC88B-202ENST00000356786 PAQR4Q8N4S7 273 aaPredicted RBP16.58■□□□□ 0.24
CCDC88B-202ENST00000356786 CLDN16Q9Y5I7 305 aa16.58■□□□□ 0.24
CCDC88B-202ENST00000356786 TMEM56-RWDD3S4R434 201 aa16.58■□□□□ 0.24
CCDC88B-202ENST00000356786 IGHV1-45A0A0A0MS14 117 aa16.57■□□□□ 0.24
CCDC88B-202ENST00000356786 TRAV8-6A0A0B4J262 113 aa16.57■□□□□ 0.24
CCDC88B-202ENST00000356786 ATXN7O15265 892 aaPredicted RBP16.57■□□□□ 0.24
CCDC88B-202ENST00000356786 COX5BP10606 129 aa16.57■□□□□ 0.24
CCDC88B-202ENST00000356786 SLC25A53Q5H9E4 307 aa16.57■□□□□ 0.24
CCDC88B-202ENST00000356786 A0A0G2JMZ2 1700 aa16.57■□□□□ 0.24
CCDC88B-202ENST00000356786 F2RL2O00254 374 aa16.57■□□□□ 0.24
CCDC88B-202ENST00000356786 RABAC1Q9UI14 185 aa16.57■□□□□ 0.24
CCDC88B-202ENST00000356786 hCG_38984A0A1B0GV85 526 aa16.57■□□□□ 0.24
CCDC88B-202ENST00000356786 TGFBR3LH3BV60 316 aa16.57■□□□□ 0.24
CCDC88B-202ENST00000356786 GDF9O60383 454 aa16.57■□□□□ 0.24
CCDC88B-202ENST00000356786 MTURNQ8N3F0 131 aa16.57■□□□□ 0.24
CCDC88B-202ENST00000356786 EAF1Q96JC9 268 aaPredicted RBP16.57■□□□□ 0.24
CCDC88B-202ENST00000356786 WFDC1Q9HC57 220 aa16.57■□□□□ 0.24
CCDC88B-202ENST00000356786 CYTL1Q9NRR1 136 aa16.57■□□□□ 0.24
CCDC88B-202ENST00000356786 ZDBF2Q9HCK1 2354 aa16.57■□□□□ 0.24
CCDC88B-202ENST00000356786 TBR1Q16650 682 aa16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 TM4SF20Q53R12 229 aa16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 PCSK4Q6UW60 755 aa16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 SCARF2Q96GP6 870 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 HS3ST3B1Q9Y662 390 aa16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 TRBV24-1A0A075B6N3 115 aa16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 ADMP35318 185 aa16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 CRIPAKQ8N1N5 446 aa16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 KLF14Q8TD94 323 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 C18orf12Q96KH6 178 aa16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 C18orf15Q96N68 181 aa16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 TRAV9-1A0A075B6T8 112 aa16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 CGB1A6NKQ9 187 aa16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 C17orf98A8MV24 154 aa16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 REG1AP05451 166 aa16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 C1orf174Q8IYL3 243 aa16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 TMEM54Q969K7 222 aa16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 SPCS1Q9Y6A9 102 aa16.56■□□□□ 0.24
CCDC88B-202ENST00000356786 RALGAPA2Q2PPJ7 1873 aa16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 C12orf77C9JDV5 145 aa16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 MPZP25189 248 aa16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 GPR6P46095 362 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 ZNF146Q15072 292 aa16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 MED12Q93074 2177 aa16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 NAPSAO96009 420 aa16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 CEACAM1P13688 526 aa16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 OR5P3Q8WZ94 311 aa16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 A6NNC1 897 aa16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 LYPD3O95274 346 aa16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 OR11H12B2RN74 326 aa16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 PATE3B3GLJ2 98 aa16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 IL4P05112 153 aa16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 IGFBP2P18065 325 aa16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 ACSF3Q4G176 576 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 OR11H1Q8NG94 326 aa16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 OR11H2Q8NH07 326 aa16.55■□□□□ 0.24
CCDC88B-202ENST00000356786 ANOS1P23352 680 aa16.54■□□□□ 0.24
CCDC88B-202ENST00000356786 C1QL4Q86Z23 238 aa16.54■□□□□ 0.24
CCDC88B-202ENST00000356786 IGKV1-9A0A0C4DH69 117 aa16.54■□□□□ 0.24
CCDC88B-202ENST00000356786 STARD6P59095 220 aa16.54■□□□□ 0.24
CCDC88B-202ENST00000356786 RPS20P60866 119 aaKnown RBP16.54■□□□□ 0.24
CCDC88B-202ENST00000356786 IDI2-AS1Q9NZ38 188 aa16.54■□□□□ 0.24
CCDC88B-202ENST00000356786 APOHP02749 345 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-202ENST00000356786 RPL39P5Q59GN2 51 aa16.54■□□□□ 0.24
CCDC88B-202ENST00000356786 WFDC3Q8IUB2 231 aa16.54■□□□□ 0.24
CCDC88B-202ENST00000356786 ROS1P08922 2347 aa16.54■□□□□ 0.24
CCDC88B-202ENST00000356786 TRBV6-7A0A0A0MS04 114 aa16.53■□□□□ 0.24
CCDC88B-202ENST00000356786 A0A1B0GWB2 263 aa16.53■□□□□ 0.24
CCDC88B-202ENST00000356786 ID3Q02535 119 aa16.53■□□□□ 0.24
CCDC88B-202ENST00000356786 IGKV1D-13A0A0B4J2D9 117 aa16.53■□□□□ 0.24
CCDC88B-202ENST00000356786 PGPEP1LA6NFU8 196 aa16.53■□□□□ 0.24
CCDC88B-202ENST00000356786 RBFOX2O43251 390 aaKnown RBP eCLIP16.53■□□□□ 0.246e-7■■■■■ 49.7
CCDC88B-202ENST00000356786 NBEAP1P0C6P0 100 aa16.53■□□□□ 0.24
CCDC88B-202ENST00000356786 IGKV1-13P0DP09 117 aa16.53■□□□□ 0.24
CCDC88B-202ENST00000356786 MOSP00540 346 aa16.53■□□□□ 0.24
CCDC88B-202ENST00000356786 FBLN7Q53RD9 439 aa16.53■□□□□ 0.24
CCDC88B-202ENST00000356786 LDLRAD2Q5SZI1 272 aa16.53■□□□□ 0.24
CCDC88B-202ENST00000356786 LINC00305Q7Z4B0 112 aa16.53■□□□□ 0.24
CCDC88B-202ENST00000356786 DUSP15Q9H1R2 295 aaPredicted RBP16.53■□□□□ 0.24
CCDC88B-202ENST00000356786 TMEM160Q9NX00 188 aa16.53■□□□□ 0.24
CCDC88B-202ENST00000356786 SPTBN2O15020 2390 aa16.53■□□□□ 0.24
CCDC88B-202ENST00000356786 IGKV1D-8A0A087WSZ0 117 aa16.53■□□□□ 0.24
CCDC88B-202ENST00000356786 HILPDAQ9Y5L2 63 aa16.53■□□□□ 0.24
CCDC88B-202ENST00000356786 NUTF2P61970 127 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-202ENST00000356786 Q5PR19 223 aa16.52■□□□□ 0.24
CCDC88B-202ENST00000356786 SLC25A45Q8N413 288 aa16.52■□□□□ 0.24
CCDC88B-202ENST00000356786 TTC9CQ8N5M4 171 aa16.52■□□□□ 0.24
CCDC88B-202ENST00000356786 FREM3P0C091 2139 aa16.52■□□□□ 0.24
CCDC88B-202ENST00000356786 CNOT1A5YKK6 2376 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-202ENST00000356786 C16orf97H3BN30 126 aa16.52■□□□□ 0.24
CCDC88B-202ENST00000356786 WNT9BO14905 357 aa16.52■□□□□ 0.24
CCDC88B-202ENST00000356786 RNASE7Q9H1E1 156 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-202ENST00000356786 SBF1O95248 1867 aa16.52■□□□□ 0.23
CCDC88B-202ENST00000356786 H3BUT2 72 aa16.52■□□□□ 0.23
CCDC88B-202ENST00000356786 ATP5IP56385 69 aaPredicted RBP16.52■□□□□ 0.23
CCDC88B-202ENST00000356786 ADIPOQQ15848 244 aa16.52■□□□□ 0.23
CCDC88B-202ENST00000356786 SYNGR3O43761 229 aa16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 FAM89BQ8N5H3 189 aa16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 DEFB124Q8NES8 71 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms