RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 GAGE12JA6NER3 117 aa10.85□□□□□ -0.67
COL6A3-203ENST00000353578 GAGE7O76087 117 aa10.85□□□□□ -0.67
COL6A3-203ENST00000353578 KLKB1P03952 638 aa10.85□□□□□ -0.67
COL6A3-203ENST00000353578 GAGE12FP0CL80 117 aa10.85□□□□□ -0.67
COL6A3-203ENST00000353578 GAGE12GP0CL81 117 aa10.85□□□□□ -0.67
COL6A3-203ENST00000353578 GAGE12IP0CL82 117 aa10.85□□□□□ -0.67
COL6A3-203ENST00000353578 GAGE4Q13068 117 aa10.85□□□□□ -0.67
COL6A3-203ENST00000353578 IL11RAQ14626 422 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 SCGB3A1Q96QR1 104 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 NEU1Q99519 415 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 LAMTOR5O43504 91 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 IGHMP01871 453 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 RPL23P62829 140 aaKnown RBP10.84□□□□□ -0.67
COL6A3-203ENST00000353578 TNXAQ16473 311 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 FAM27BQ5VT28 67 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 TDHQ8IZJ6 230 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 CEACAM1P13688 526 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 ZNF793Q6ZN11 406 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 Q6ZNB5 142 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 TMEFF1Q8IYR6 380 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 FRMPD3Q5JV73 1810 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 PEX7O00628 323 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 CDAP32320 146 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 PTGDSP41222 190 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 GGTLC1Q9BX51 225 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 A0A1W2PNR3 127 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 UCP1P25874 307 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 TSPAN7P41732 249 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 SRSF1Q07955 248 aaKnown RBP eCLIP10.84□□□□□ -0.67
COL6A3-203ENST00000353578 CCL14Q16627 93 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 VN1R2Q8NFZ6 395 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 BEX4Q9NWD9 120 aaPredicted RBP10.84□□□□□ -0.67
COL6A3-203ENST00000353578 PCOLCE2Q9UKZ9 415 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 NEUROG3Q9Y4Z2 214 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 PAX1P15863 534 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 ZNF441Q8N8Z8 693 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 F2Z2F3 143 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 IGKCP01834 107 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 MDKP21741 143 aaPredicted RBP10.84□□□□□ -0.67
COL6A3-203ENST00000353578 CADM4Q8NFZ8 388 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 MEIG1Q5JSS6 88 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 FSCN3Q9NQT6 498 aa10.84□□□□□ -0.67
COL6A3-203ENST00000353578 TNFRSF6BO95407 300 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 GPR6P46095 362 aaPredicted RBP10.83□□□□□ -0.68
COL6A3-203ENST00000353578 OR5P3Q8WZ94 311 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 ZNF703Q9H7S9 590 aaPredicted RBP10.83□□□□□ -0.68
COL6A3-203ENST00000353578 A0A096LPE4 126 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 A0A1W2PPZ6 126 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 FCN3O75636 299 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 NANOS3P60323 173 aaKnown RBP10.83□□□□□ -0.68
COL6A3-203ENST00000353578 PSMB11A5LHX3 300 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 J3KT08 172 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 HSPE1P61604 102 aaKnown RBP10.83□□□□□ -0.68
COL6A3-203ENST00000353578 GDF15Q99988 308 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 ZGLP1P0C6A0 271 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 PGFP49763 221 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 WISP3O95389 354 aaPredicted RBP10.83□□□□□ -0.68
COL6A3-203ENST00000353578 TIMP3P35625 211 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 GAGE5Q13069 117 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 GAGE6Q13070 117 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 LIMS2Q7Z4I7 341 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 A0A1W2PRE2 83 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 TRACP01848 142 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 FAM157BP0CG42 384 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 OR9G1Q8NH87 305 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 TM4SF19Q96DZ7 209 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 COL6A6A6NMZ7 2263 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 GREB1LQ9C091 1923 aaPredicted RBP10.83□□□□□ -0.68
COL6A3-203ENST00000353578 CNTFRP26992 372 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 SRSF12Q8WXF0 261 aaKnown RBP10.83□□□□□ -0.68
COL6A3-203ENST00000353578 FOXC2Q99958 501 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 ERG28Q9UKR5 140 aa10.83□□□□□ -0.68
COL6A3-203ENST00000353578 CHAC1Q9BUX1 264 aa10.82□□□□□ -0.68
COL6A3-203ENST00000353578 MBNL2Q5VZF2 373 aaKnown RBP10.82□□□□□ -0.68
COL6A3-203ENST00000353578 PRSS27Q9BQR3 290 aa10.82□□□□□ -0.68
COL6A3-203ENST00000353578 C6orf15Q6UXA7 325 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-203ENST00000353578 SLC25A15Q9Y619 301 aa10.82□□□□□ -0.68
COL6A3-203ENST00000353578 CRYBB3P26998 211 aa10.82□□□□□ -0.68
COL6A3-203ENST00000353578 KIR3DS1Q14943 382 aa10.82□□□□□ -0.68
COL6A3-203ENST00000353578 TMEM170BQ5T4T1 132 aa10.82□□□□□ -0.68
COL6A3-203ENST00000353578 MIC13Q5XKP0 118 aa10.82□□□□□ -0.68
COL6A3-203ENST00000353578 NEGR1Q7Z3B1 354 aa10.82□□□□□ -0.68
COL6A3-203ENST00000353578 TM2D1Q9BX74 207 aa10.82□□□□□ -0.68
COL6A3-203ENST00000353578 TNFRSF19Q9NS68 423 aa10.82□□□□□ -0.68
COL6A3-203ENST00000353578 HCFC2Q9Y5Z7 792 aa10.82□□□□□ -0.68
COL6A3-203ENST00000353578 TSKUQ8WUA8 353 aa10.82□□□□□ -0.68
COL6A3-203ENST00000353578 A0A0U1RQS6 177 aa10.82□□□□□ -0.68
COL6A3-203ENST00000353578 SYNGR3O43761 229 aa10.82□□□□□ -0.68
COL6A3-203ENST00000353578 PGLYRP1O75594 196 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-203ENST00000353578 ZNF775Q96BV0 537 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-203ENST00000353578 FGFRL1Q8N441 504 aa10.81□□□□□ -0.68
COL6A3-203ENST00000353578 LINC01465Q8N7H1 131 aa10.81□□□□□ -0.68
COL6A3-203ENST00000353578 OR5AN1Q8NGI8 311 aa10.81□□□□□ -0.68
COL6A3-203ENST00000353578 ATXN7O15265 892 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-203ENST00000353578 PLAC1Q9HBJ0 212 aa10.81□□□□□ -0.68
COL6A3-203ENST00000353578 TMEM108Q6UXF1 575 aa10.81□□□□□ -0.68
COL6A3-203ENST00000353578 KIR3DL3Q8N743 410 aa10.81□□□□□ -0.68
COL6A3-203ENST00000353578 LOC105371242A0A075B767 164 aa10.81□□□□□ -0.68
COL6A3-203ENST00000353578 PPIAL4CA0A0B4J2A2 164 aa10.81□□□□□ -0.68
COL6A3-203ENST00000353578 C9orf118A6NHY6 69 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms