RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 NMSQ5H8A3 153 aa17.48■□□□□ 0.39
SDC3-202ENST00000339394 C10orf55Q5SWW7 151 aa17.48■□□□□ 0.39
SDC3-202ENST00000339394 FOXRED2Q8IWF2 684 aa17.48■□□□□ 0.39
SDC3-202ENST00000339394 OR4A16Q8NH70 328 aa17.48■□□□□ 0.39
SDC3-202ENST00000339394 ARPC1AQ92747 370 aa17.48■□□□□ 0.39
SDC3-202ENST00000339394 NOL4LQ96MY1 436 aaPredicted RBP17.48■□□□□ 0.39
SDC3-202ENST00000339394 GPN1Q9HCN4 374 aaPredicted RBP17.48■□□□□ 0.39
SDC3-202ENST00000339394 AP4M1O00189 453 aa17.47■□□□□ 0.39
SDC3-202ENST00000339394 OPN1MWP04001 364 aa17.47■□□□□ 0.39
SDC3-202ENST00000339394 HOXB5P09067 269 aa17.47■□□□□ 0.39
SDC3-202ENST00000339394 OPN1MW2P0DN77 364 aa17.47■□□□□ 0.39
SDC3-202ENST00000339394 OPN1MW3P0DN78 364 aa17.47■□□□□ 0.39
SDC3-202ENST00000339394 EGR2P11161 476 aaPredicted RBP17.47■□□□□ 0.39
SDC3-202ENST00000339394 TATDN3Q17R31 274 aa17.47■□□□□ 0.39
SDC3-202ENST00000339394 GRPEL2Q8TAA5 225 aa17.47■□□□□ 0.39
SDC3-202ENST00000339394 CHPT1Q8WUD6 406 aa17.47■□□□□ 0.39
SDC3-202ENST00000339394 SRSF12Q8WXF0 261 aaKnown RBP17.47■□□□□ 0.39
SDC3-202ENST00000339394 C19orf24Q9BVV8 132 aa17.47■□□□□ 0.39
SDC3-202ENST00000339394 TMEM14BQ9NUH8 114 aa17.47■□□□□ 0.39
SDC3-202ENST00000339394 PRNDQ9UKY0 176 aa17.47■□□□□ 0.39
SDC3-202ENST00000339394 TMED3Q9Y3Q3 217 aa17.47■□□□□ 0.39
SDC3-202ENST00000339394 C15orf61A6NNL5 157 aa17.46■□□□□ 0.39
SDC3-202ENST00000339394 SNRPGP15A8MWD9 76 aa17.46■□□□□ 0.39
SDC3-202ENST00000339394 E7EUB6 86 aa17.46■□□□□ 0.39
SDC3-202ENST00000339394 RBMXL2O75526 392 aaKnown RBP17.46■□□□□ 0.39
SDC3-202ENST00000339394 ADAP1O75689 374 aa17.46■□□□□ 0.39
SDC3-202ENST00000339394 C12orf45Q8N5I9 185 aaPredicted RBP17.46■□□□□ 0.39
SDC3-202ENST00000339394 ABHD5Q8WTS1 349 aa17.46■□□□□ 0.39
SDC3-202ENST00000339394 TMEM158Q8WZ71 300 aa17.46■□□□□ 0.39
SDC3-202ENST00000339394 COMMD5Q9GZQ3 224 aa17.46■□□□□ 0.39
SDC3-202ENST00000339394 TMEM89A2RUT3 159 aa17.45■□□□□ 0.38
SDC3-202ENST00000339394 CLPSL1A2RUU4 121 aa17.45■□□□□ 0.38
SDC3-202ENST00000339394 MSGN1A6NI15 193 aa17.45■□□□□ 0.38
SDC3-202ENST00000339394 FOXL1Q12952 345 aa17.45■□□□□ 0.38
SDC3-202ENST00000339394 GGNBP1Q5YKI7 109 aa17.45■□□□□ 0.38
SDC3-202ENST00000339394 UXS1Q8NBZ7 420 aa17.45■□□□□ 0.38
SDC3-202ENST00000339394 SGMS2Q8NHU3 365 aa17.45■□□□□ 0.38
SDC3-202ENST00000339394 FKBP11Q9NYL4 201 aa17.45■□□□□ 0.38
SDC3-202ENST00000339394 CACNG5Q9UF02 275 aa17.45■□□□□ 0.38
SDC3-202ENST00000339394 FOXA2Q9Y261 457 aaPredicted RBP17.45■□□□□ 0.38
SDC3-202ENST00000339394 RNF114Q9Y508 228 aa17.45■□□□□ 0.38
SDC3-202ENST00000339394 OR51B2Q9Y5P1 312 aa17.45■□□□□ 0.38
SDC3-202ENST00000339394 TEX50A0A1B0GTY4 177 aa17.45■□□□□ 0.38
SDC3-202ENST00000339394 RPL27AP46776 148 aaKnown RBP17.45■□□□□ 0.38
SDC3-202ENST00000339394 ZNF429Q86V71 674 aa17.45■□□□□ 0.38
SDC3-202ENST00000339394 STPG2Q8N412 459 aa17.45■□□□□ 0.38
SDC3-202ENST00000339394 LFNGQ8NES3 379 aa17.45■□□□□ 0.38
SDC3-202ENST00000339394 QTRT1Q9BXR0 403 aaKnown RBP17.45■□□□□ 0.38
SDC3-202ENST00000339394 WSB1Q9Y6I7 421 aa17.45■□□□□ 0.38
SDC3-202ENST00000339394 A0A1B0GW64 132 aa17.44■□□□□ 0.38
SDC3-202ENST00000339394 G3V318 75 aa17.44■□□□□ 0.38
SDC3-202ENST00000339394 PLXNB1O43157 2135 aa17.44■□□□□ 0.38
SDC3-202ENST00000339394 MINDY2Q8NBR6 621 aa17.44■□□□□ 0.38
SDC3-202ENST00000339394 WNT10AQ9GZT5 417 aa17.44■□□□□ 0.38
SDC3-202ENST00000339394 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.44■□□□□ 0.38
SDC3-202ENST00000339394 ZNF580Q9UK33 172 aa17.44■□□□□ 0.38
SDC3-202ENST00000339394 TNCP24821 2201 aa17.43■□□□□ 0.38
SDC3-202ENST00000339394 A0A1B0GUS0 222 aa17.43■□□□□ 0.38
SDC3-202ENST00000339394 C7orf66A4D0T2 115 aa17.43■□□□□ 0.38
SDC3-202ENST00000339394 CGB1A6NKQ9 187 aa17.43■□□□□ 0.38
SDC3-202ENST00000339394 APELAP0DMC3 54 aa17.43■□□□□ 0.38
SDC3-202ENST00000339394 SULT1A3P0DMM9 295 aa17.43■□□□□ 0.38
SDC3-202ENST00000339394 SULT1A4P0DMN0 295 aa17.43■□□□□ 0.38
SDC3-202ENST00000339394 CRIP2P52943 208 aaPredicted RBP17.43■□□□□ 0.38
SDC3-202ENST00000339394 OR5B3Q8NH48 314 aa17.43■□□□□ 0.38
SDC3-202ENST00000339394 FYTTD1Q96QD9 318 aaKnown RBP17.43■□□□□ 0.38
SDC3-202ENST00000339394 SPIN2AQ99865 258 aa17.43■□□□□ 0.38
SDC3-202ENST00000339394 SPIN2BQ9BPZ2 258 aa17.43■□□□□ 0.38
SDC3-202ENST00000339394 A0A1B0GU03 582 aa17.42■□□□□ 0.38
SDC3-202ENST00000339394 MPTX1A8MV57 137 aa17.42■□□□□ 0.38
SDC3-202ENST00000339394 TEX22C9J3V5 150 aa17.42■□□□□ 0.38
SDC3-202ENST00000339394 IFNA21P01568 189 aa17.42■□□□□ 0.38
SDC3-202ENST00000339394 TMEM267Q0VDI3 215 aaPredicted RBP17.42■□□□□ 0.38
SDC3-202ENST00000339394 ECSCRQ19T08 205 aa17.42■□□□□ 0.38
SDC3-202ENST00000339394 AKIRIN2Q53H80 203 aa17.42■□□□□ 0.38
SDC3-202ENST00000339394 OR1L8Q8NGR8 309 aa17.42■□□□□ 0.38
SDC3-202ENST00000339394 NDUFA4L2Q9NRX3 87 aa17.42■□□□□ 0.38
SDC3-202ENST00000339394 COA4Q9NYJ1 87 aa17.42■□□□□ 0.38
SDC3-202ENST00000339394 ZNF257Q9Y2Q1 563 aa17.42■□□□□ 0.38
SDC3-202ENST00000339394 TRAV41A0A0B4J266 112 aa17.41■□□□□ 0.38
SDC3-202ENST00000339394 HAX1O00165 279 aa17.41■□□□□ 0.38
SDC3-202ENST00000339394 ST8SIA3O43173 380 aa17.41■□□□□ 0.38
SDC3-202ENST00000339394 PROK1P58294 105 aa17.41■□□□□ 0.38
SDC3-202ENST00000339394 HSPE1P61604 102 aaKnown RBP17.41■□□□□ 0.38
SDC3-202ENST00000339394 SMCO1Q147U7 214 aa17.41■□□□□ 0.38
SDC3-202ENST00000339394 AARDQ4LEZ3 155 aa17.41■□□□□ 0.38
SDC3-202ENST00000339394 ASPHD1Q5U4P2 390 aa17.41■□□□□ 0.38
SDC3-202ENST00000339394 CENPVQ7Z7K6 275 aaPredicted RBP17.41■□□□□ 0.38
SDC3-202ENST00000339394 ALG5Q9Y673 324 aa17.41■□□□□ 0.38
SDC3-202ENST00000339394 HMX3A6NHT5 357 aa17.4■□□□□ 0.38
SDC3-202ENST00000339394 SLC25A6P12236 298 aa17.4■□□□□ 0.38
SDC3-202ENST00000339394 AWAT1Q58HT5 328 aa17.4■□□□□ 0.38
SDC3-202ENST00000339394 C19orf54Q5BKX5 351 aa17.4■□□□□ 0.38
SDC3-202ENST00000339394 UNQ5815/PRO19632Q6UWF5 114 aa17.4■□□□□ 0.38
SDC3-202ENST00000339394 ZNF329Q86UD4 541 aa17.4■□□□□ 0.38
SDC3-202ENST00000339394 KLHDC1Q8N7A1 406 aa17.4■□□□□ 0.38
SDC3-202ENST00000339394 HINT2Q9BX68 163 aa17.4■□□□□ 0.38
SDC3-202ENST00000339394 GON7Q9BXV9 100 aa17.4■□□□□ 0.38
SDC3-202ENST00000339394 CCSO14618 274 aa17.4■□□□□ 0.38
SDC3-202ENST00000339394 PITX3O75364 302 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms