RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 IFITM2Q01629 132 aa11.95□□□□□ -0.5
CCDC88C-202ENST00000334448 EWSR1Q01844 656 aaKnown RBP eCLIP11.95□□□□□ -0.5
CCDC88C-202ENST00000334448 PRSS8Q16651 343 aa11.95□□□□□ -0.5
CCDC88C-202ENST00000334448 CYB5R2Q6BCY4 276 aa11.95□□□□□ -0.5
CCDC88C-202ENST00000334448 TMEM14EPQ6UXP3 125 aa11.95□□□□□ -0.5
CCDC88C-202ENST00000334448 SLC51BQ86UW2 128 aa11.95□□□□□ -0.5
CCDC88C-202ENST00000334448 MMD2Q8IY49 270 aa11.95□□□□□ -0.5
CCDC88C-202ENST00000334448 STOML3Q8TAV4 291 aa11.95□□□□□ -0.5
CCDC88C-202ENST00000334448 ARPC5LQ9BPX5 153 aa11.95□□□□□ -0.5
CCDC88C-202ENST00000334448 SIGLEC9Q9Y336 463 aa11.95□□□□□ -0.5
CCDC88C-202ENST00000334448 OR51B2Q9Y5P1 312 aa11.95□□□□□ -0.5
CCDC88C-202ENST00000334448 ITPR3Q14573 2671 aa11.95□□□□□ -0.5
CCDC88C-202ENST00000334448 KANTRA0A1W2PQU2 76 aa11.94□□□□□ -0.5
CCDC88C-202ENST00000334448 IGSF23A1L1A6 192 aa11.94□□□□□ -0.5
CCDC88C-202ENST00000334448 RRHO14718 337 aa11.94□□□□□ -0.5
CCDC88C-202ENST00000334448 SLC25A17O43808 307 aa11.94□□□□□ -0.5
CCDC88C-202ENST00000334448 AVPP01185 164 aa11.94□□□□□ -0.5
CCDC88C-202ENST00000334448 IFNA17P01571 189 aa11.94□□□□□ -0.5
CCDC88C-202ENST00000334448 SNRNP70P08621 437 aaKnown RBP11.94□□□□□ -0.5
CCDC88C-202ENST00000334448 SULT1A1P50225 295 aa11.94□□□□□ -0.5
CCDC88C-202ENST00000334448 CAV2P51636 162 aa11.94□□□□□ -0.5
CCDC88C-202ENST00000334448 C9orf139Q6ZV77 190 aa11.94□□□□□ -0.5
CCDC88C-202ENST00000334448 OR1L8Q8NGR8 309 aa11.94□□□□□ -0.5
CCDC88C-202ENST00000334448 ZNF430Q9H8G1 570 aaPredicted RBP11.94□□□□□ -0.5
CCDC88C-202ENST00000334448 NDUFA4L2Q9NRX3 87 aa11.94□□□□□ -0.5
CCDC88C-202ENST00000334448 ITGB1BP2Q9UKP3 347 aa11.94□□□□□ -0.5
CCDC88C-202ENST00000334448 AKAP9Q99996 3911 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 TEX50A0A1B0GTY4 177 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 FAM24AA6NFZ4 105 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 CEBPZOSA8MTT3 80 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 NBR2O15453 112 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 KCNAB3O43448 404 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 NXPH3O95157 252 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 FAM106CPP0CH98 169 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 IAPPP10997 89 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 AP2S1P53680 142 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 BSXQ3C1V8 233 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 RUSC1-AS1Q66K80 236 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 PPP1R27Q86WC6 154 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 STX12Q86Y82 276 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 MAPK1IP1LQ8NDC0 245 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 ZDHHC16Q969W1 377 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 RBMXL1Q96E39 390 aaKnown RBP11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 COMMD5Q9GZQ3 224 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 CYTL1Q9NRR1 136 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 PSENENQ9NZ42 101 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 FBXL17Q9UF56 701 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 NUP50Q9UKX7 468 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 CR1P17927 2039 aa11.93□□□□□ -0.5
CCDC88C-202ENST00000334448 CSMD1Q96PZ7 3565 aa11.92□□□□□ -0.5
CCDC88C-202ENST00000334448 FBP1P09467 338 aa11.92□□□□□ -0.5
CCDC88C-202ENST00000334448 UBA52P62987 128 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-202ENST00000334448 MMDQ15546 238 aa11.92□□□□□ -0.5
CCDC88C-202ENST00000334448 C5orf64Q2M2E5 130 aa11.92□□□□□ -0.5
CCDC88C-202ENST00000334448 TEX29Q8N6K0 151 aa11.92□□□□□ -0.5
CCDC88C-202ENST00000334448 OR4C12Q96R67 309 aa11.92□□□□□ -0.5
CCDC88C-202ENST00000334448 CLCC1Q96S66 551 aa11.92□□□□□ -0.5
CCDC88C-202ENST00000334448 SRSF8Q9BRL6 282 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-202ENST00000334448 TPSG1Q9NRR2 321 aa11.92□□□□□ -0.5
CCDC88C-202ENST00000334448 METTL1Q9UBP6 276 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-202ENST00000334448 U3KQ87 197 aa11.92□□□□□ -0.5
CCDC88C-202ENST00000334448 A0A0U1RQK1 487 aa11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 A0A1W2PN81 502 aa11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 C15orf62A8K5M9 175 aa11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 CNTFRP26992 372 aa11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 CHRNA7P36544 502 aa11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 COMPP49747 757 aaPredicted RBP11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 RPP30P78346 268 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 SSBP2P81877 361 aaPredicted RBP11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 TEX261Q6UWH6 196 aa11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 BRD3OSQ6XYD6 125 aa11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 ZNF767PQ75MW2 155 aa11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 PHYHIPLQ96FC7 376 aa11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 ARV1Q9H2C2 271 aa11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 HIPK2Q9H2X6 1198 aa11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 PLEKHA3Q9HB20 300 aa11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 C1RLQ9NZP8 487 aa11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 KIAA1456Q9P272 454 aa11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 STRAPQ9Y3F4 350 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 ZANQ9Y493 2812 aa11.91□□□□□ -0.5
CCDC88C-202ENST00000334448 CGB1A6NKQ9 187 aa11.9□□□□□ -0.5
CCDC88C-202ENST00000334448 PMS2P5A8MQ11 134 aa11.9□□□□□ -0.5
CCDC88C-202ENST00000334448 H3BP45 60 aa11.9□□□□□ -0.5
CCDC88C-202ENST00000334448 JTBO76095 146 aa11.9□□□□□ -0.5
CCDC88C-202ENST00000334448 HOXA1P49639 335 aaPredicted RBP11.9□□□□□ -0.5
CCDC88C-202ENST00000334448 F2RL1P55085 397 aa11.9□□□□□ -0.5
CCDC88C-202ENST00000334448 EIF5AP63241 154 aaKnown RBP11.9□□□□□ -0.5
CCDC88C-202ENST00000334448 FBLN7Q53RD9 439 aa11.9□□□□□ -0.5
CCDC88C-202ENST00000334448 HSD17B13Q7Z5P4 300 aaPredicted RBP11.9□□□□□ -0.5
CCDC88C-202ENST00000334448 UBAC2Q8NBM4 344 aa11.9□□□□□ -0.5
CCDC88C-202ENST00000334448 PIFOQ8TCI5 191 aa11.9□□□□□ -0.5
CCDC88C-202ENST00000334448 FBXL15Q9H469 300 aa11.9□□□□□ -0.5
CCDC88C-202ENST00000334448 ZC4H2Q9NQZ6 224 aa11.9□□□□□ -0.5
CCDC88C-202ENST00000334448 A0A1B0GW64 132 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 DFFBO76075 338 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 MYOD1P15172 320 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 TMEM11P17152 192 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 PAX6P26367 422 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 RPL27AP46776 148 aaKnown RBP11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 HBG1P69891 147 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms