RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 RPS19P39019 145 aaKnown RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 CDKN2CP42773 168 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 IDH2P48735 452 aaKnown RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 UCP3P55916 312 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 BIDP55957 195 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 KRTAP10-1P60331 282 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 RND3P61587 244 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 FAM3AP98173 230 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 CD47Q08722 323 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 MPPED2Q15777 294 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 BAK1Q16611 211 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 TIMM50Q3ZCQ8 353 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 MESTQ5EB52 335 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 PAGE3Q5JUK9 113 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 ETFRF1Q6IPR1 90 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 KCTD9Q7L273 389 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 RRM2BQ7LG56 351 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 CPLX4Q7Z7G2 160 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 OAFQ86UD1 273 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 TMEM219Q86XT9 240 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 PRSS35Q8N3Z0 413 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 C9orf62Q8N4C0 152 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 KRTCAP2Q8N6L1 136 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 OR2T33Q8NG76 320 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 OR4D6Q8NGJ1 314 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 DLX4Q92988 240 aaPredicted RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 RAB24Q969Q5 203 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 EXOSC8Q96B26 276 aaKnown RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 SLC25A38Q96DW6 304 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 PHYHIPLQ96FC7 376 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 C16orf74Q96GX8 76 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 FAM19A4Q96LR4 140 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 VGLL1Q99990 258 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 C7orf50Q9BRJ6 194 aaKnown RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 C1orf50Q9BV19 199 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 GGACTQ9BVM4 153 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 PAPOLGQ9BWT3 736 aaKnown RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 SLIRPQ9GZT3 109 aaKnown RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 OR10A2Q9H208 303 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 GPR173Q9NS66 373 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 IMPAD1Q9NX62 359 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 CLEC2DQ9UHP7 191 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 LSM2Q9Y333 95 aaKnown RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 PRR14LQ5THK1 2151 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 USH2AO75445 5202 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 ABCA1O95477 2261 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 A0A0J9YWU9 116 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 MDFIC2A0A1B0GVS7 189 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 RAB19A4D1S5 217 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 CXorf65A6NEN9 183 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 CENPXA8MT69 81 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 HMSDA8MTL9 139 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 F8W036 122 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 WRBO00258 174 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 SLC33A1O00400 549 aaPredicted RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 ZNF593O00488 134 aaPredicted RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 EI24O14681 340 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 RRHO14718 337 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 HTR3BO95264 441 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 SERPINA3P01011 423 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 IFNA1P01562 189 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 HIST1H2ABP04908 130 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 NBEAP1P0C6P0 100 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 LINC00032P0C843 101 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 IL7RP16871 459 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 C4BPBP20851 252 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 OR3A3P47888 321 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 RAB25P57735 213 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 RGS8P57771 180 aaPredicted RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 SEC61BP60468 96 aaKnown RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 UBE2MP61081 183 aaKnown RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 RPL37AP61513 92 aaKnown RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 ERVS71-1P61550 626 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 LCN6P62502 163 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 PRR3P79522 188 aaKnown RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 MT1HP80294 61 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 MRPS10P82664 201 aaKnown RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 QRFPP83859 136 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 LIPEQ05469 1076 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 ZNF345Q14585 488 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 SYPL1Q16563 259 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 TRIM16LQ309B1 348 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 RNASE12Q5GAN4 147 aaKnown RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 DMKNQ6E0U4 476 aaPredicted RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 LAIR2Q6ISS4 152 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 RPL22L1Q6P5R6 122 aaKnown RBP1□□□□□ -2.25
LINC00643-201ENST00000334389 LYPD2Q6UXB3 125 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 HIST3H2AQ7L7L0 130 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 SPATA12Q7Z6I5 190 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 LYSMD2Q8IV50 215 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 NRMQ8IXM6 262 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 KDM8Q8N371 416 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 SLC37A3Q8NCC5 494 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 OR5D14Q8NGL3 314 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 OR10G4Q8NGN3 311 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 OR14K1Q8NGZ2 314 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 RHOXF1Q8NHV9 184 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 PHOSPHO1Q8TCT1 267 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 TMED6Q8WW62 240 aa1□□□□□ -2.25
LINC00643-201ENST00000334389 HIST1H2ACQ93077 130 aa1□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms