RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 GUCA2BQ16661 112 aa13.72□□□□□ -0.21
DDX41-201ENST00000330503 SSBP3Q9BWW4 388 aaPredicted RBP13.72□□□□□ -0.21
DDX41-201ENST00000330503 CARHSP1Q9Y2V2 147 aaKnown RBP13.72□□□□□ -0.21
DDX41-201ENST00000330503 OVOL3O00110 214 aa13.71□□□□□ -0.21
DDX41-201ENST00000330503 OPN1MWP04001 364 aa13.71□□□□□ -0.21
DDX41-201ENST00000330503 OPN1MW2P0DN77 364 aa13.71□□□□□ -0.21
DDX41-201ENST00000330503 OPN1MW3P0DN78 364 aa13.71□□□□□ -0.21
DDX41-201ENST00000330503 MC5RP33032 325 aa13.71□□□□□ -0.21
DDX41-201ENST00000330503 ARF6P62330 175 aa13.71□□□□□ -0.21
DDX41-201ENST00000330503 TLE4Q04727 773 aa13.71□□□□□ -0.21
DDX41-201ENST00000330503 OR4P4Q8NGL7 312 aa13.71□□□□□ -0.21
DDX41-201ENST00000330503 SFT2D1Q8WV19 159 aa13.71□□□□□ -0.21
DDX41-201ENST00000330503 HINT2Q9BX68 163 aa13.71□□□□□ -0.21
DDX41-201ENST00000330503 SEC11CQ9BY50 192 aa13.71□□□□□ -0.21
DDX41-201ENST00000330503 A0A1B0GW64 132 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 LY6LH3BQJ8 138 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 SCAF4O95104 1147 aaKnown RBP13.7□□□□□ -0.22
DDX41-201ENST00000330503 SFTA3P0C7M3 94 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 SSX7Q7RTT5 188 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 PNKDQ8N490 385 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 LFNGQ8NES3 379 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 TMEM167AQ8TBQ9 72 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 FKBP11Q9NYL4 201 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 IGHV3-72A0A0B4J1Y9 119 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 TRAV1-1A0A0B4J248 108 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 CA2P00918 260 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 CD1BP29016 333 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 PEA15Q15121 130 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 TMEM41BQ5BJD5 291 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 ACSM6Q6P461 480 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 MBD3L1Q8WWY6 194 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 RARRES2Q99969 163 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 ENY2Q9NPA8 101 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 WDR83OSQ9Y284 106 aa13.7□□□□□ -0.22
DDX41-201ENST00000330503 hCG_1809904A0A1W2PP81 198 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 A0A1W2PPE2 198 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 A0A1W2PR64 198 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 A0A1W2PRV1 198 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 BTBD17A6NE02 478 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 IGKV1D-33P01593 117 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 IGKV1-33P01594 117 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 ZFP36P26651 326 aaKnown RBP13.69□□□□□ -0.22
DDX41-201ENST00000330503 ELLP55199 621 aaPredicted RBP13.69□□□□□ -0.22
DDX41-201ENST00000330503 MRGPRG-AS1Q2M3A8 158 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 LDLRAD2Q5SZI1 272 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 GGACTQ9BVM4 153 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 NPCDR1Q9BY65 106 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 EIF5A2Q9GZV4 153 aaKnown RBP13.69□□□□□ -0.22
DDX41-201ENST00000330503 E7EUB6 86 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 NPY1RP25929 384 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 RAB13P51153 203 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 RAB11AP62491 216 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 BTN1A1Q13410 526 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 SLC24A4Q8NFF2 622 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 OR5B3Q8NH48 314 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 C1orf159Q96HA4 380 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 RCC1LQ96I51 464 aaKnown RBP13.69□□□□□ -0.22
DDX41-201ENST00000330503 PLEKHA3Q9HB20 300 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 NDUFA4L2Q9NRX3 87 aa13.69□□□□□ -0.22
DDX41-201ENST00000330503 IGHV1-3A0A0C4DH29 117 aa13.68□□□□□ -0.22
DDX41-201ENST00000330503 M0R1W7 72 aa13.68□□□□□ -0.22
DDX41-201ENST00000330503 ENSAO43768 121 aaKnown RBP13.68□□□□□ -0.22
DDX41-201ENST00000330503 IFNA4P05014 189 aa13.68□□□□□ -0.22
DDX41-201ENST00000330503 USF1P22415 310 aaPredicted RBP13.68□□□□□ -0.22
DDX41-201ENST00000330503 RAB2AP61019 212 aa13.68□□□□□ -0.22
DDX41-201ENST00000330503 RPL8P62917 257 aaKnown RBP13.68□□□□□ -0.22
DDX41-201ENST00000330503 DLK1P80370 383 aa13.68□□□□□ -0.22
DDX41-201ENST00000330503 HCP5Q6MZN7 132 aa13.68□□□□□ -0.22
DDX41-201ENST00000330503 RPP25LQ8N5L8 163 aaKnown RBP13.68□□□□□ -0.22
DDX41-201ENST00000330503 OR10W1Q8NGF6 305 aa13.68□□□□□ -0.22
DDX41-201ENST00000330503 OR4A5Q8NH83 315 aa13.68□□□□□ -0.22
DDX41-201ENST00000330503 IGFBPL1Q8WX77 278 aa13.68□□□□□ -0.22
DDX41-201ENST00000330503 INSIG2Q9Y5U4 225 aa13.68□□□□□ -0.22
DDX41-201ENST00000330503 SIRT7Q9NRC8 400 aa13.67□□□□□ -0.22
DDX41-201ENST00000330503 KIAA1456Q9P272 454 aa13.67□□□□□ -0.22
DDX41-201ENST00000330503 RBFOX3A6NFN3 312 aa13.67□□□□□ -0.22
DDX41-201ENST00000330503 CGB1A6NKQ9 187 aa13.67□□□□□ -0.22
DDX41-201ENST00000330503 HBE1P02100 147 aa13.67□□□□□ -0.22
DDX41-201ENST00000330503 LGALS7P47929 136 aa13.67□□□□□ -0.22
DDX41-201ENST00000330503 PPT1P50897 306 aa13.67□□□□□ -0.22
DDX41-201ENST00000330503 TREML4Q6UXN2 200 aa13.67□□□□□ -0.22
DDX41-201ENST00000330503 MOB3BQ86TA1 216 aa13.67□□□□□ -0.22
DDX41-201ENST00000330503 OR11H6Q8NGC7 330 aa13.67□□□□□ -0.22
DDX41-201ENST00000330503 PBDC1Q9BVG4 233 aa13.67□□□□□ -0.22
DDX41-201ENST00000330503 ZNF430Q9H8G1 570 aaPredicted RBP13.67□□□□□ -0.22
DDX41-201ENST00000330503 FLNCQ14315 2725 aa13.67□□□□□ -0.22
DDX41-201ENST00000330503 SLC25A17O43808 307 aa13.66□□□□□ -0.22
DDX41-201ENST00000330503 IGHV2-5P01817 119 aa13.66□□□□□ -0.22
DDX41-201ENST00000330503 PRTN3P24158 256 aa13.66□□□□□ -0.22
DDX41-201ENST00000330503 BSXQ3C1V8 233 aa13.66□□□□□ -0.22
DDX41-201ENST00000330503 ARSJQ5FYB0 599 aaPredicted RBP13.66□□□□□ -0.22
DDX41-201ENST00000330503 FFAR4Q5NUL3 377 aa13.66□□□□□ -0.22
DDX41-201ENST00000330503 LCN15Q6UWW0 184 aa13.66□□□□□ -0.22
DDX41-201ENST00000330503 SVBPQ8N300 66 aa13.66□□□□□ -0.22
DDX41-201ENST00000330503 OR1L8Q8NGR8 309 aa13.66□□□□□ -0.22
DDX41-201ENST00000330503 VSTM2AQ8TAG5 236 aa13.66□□□□□ -0.22
DDX41-201ENST00000330503 NKX6-2Q9C056 277 aaPredicted RBP13.66□□□□□ -0.22
DDX41-201ENST00000330503 TPSG1Q9NRR2 321 aa13.66□□□□□ -0.22
DDX41-201ENST00000330503 AMMECR1Q9Y4X0 333 aaPredicted RBP13.66□□□□□ -0.22
DDX41-201ENST00000330503 EIF3GO75821 320 aaKnown RBP eCLIP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms