RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 METTL9Q9H1A3 318 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 Q9H521 79 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 SND1-IT1Q9HBX3 110 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 BIN3Q9NQY0 253 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 C19orf12Q9NSK7 152 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 STOML2Q9UJZ1 356 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 NDUFAF1Q9Y375 327 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 POLR3HQ9Y535 204 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-201ENST00000326004 JMJD1CQ15652 2540 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 TET1Q8NFU7 2136 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 HIVEP3Q5T1R4 2406 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 ICE1Q9Y2F5 2266 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 SPENQ96T58 3664 aaKnown RBP1.74□□□□□ -2.13
HMGB1-201ENST00000326004 LINC00862A6NCI5 91 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 METTL15A6NJ78 407 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 ZNF729A6NN14 1252 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-201ENST00000326004 CLDN25C9JDP6 229 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 K7EM74 188 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 M0QYV0 167 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 AZIN1O14977 448 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 COX7A2P2O60397 106 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 CST8O60676 142 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 SOX14O95416 240 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 LHBP01229 141 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 IFNA4P05014 189 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 SEC11BP0C7V7 166 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 SMIM6P0DI80 62 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 C8orf88P0DMB2 117 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 MPV17P39210 176 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 MAP2K4P45985 399 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 TGM4P49221 684 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 TAS2R43P59537 309 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 SNAP25P60880 206 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 PSME3P61289 254 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 MYL5Q02045 173 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 HTR4Q13639 388 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 SMCO1Q147U7 214 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 GRK1Q15835 563 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 LUZP6Q538Z0 58 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 KLHL12Q53G59 568 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 UBE2NLQ5JXB2 153 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 GLYATQ6IB77 296 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 MORN3Q6PF18 240 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-201ENST00000326004 TTC33Q6PID6 262 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-201ENST00000326004 CLEC20AQ6ZU45 233 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 ZNF767PQ75MW2 155 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 FAM19A5Q7Z5A7 132 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-201ENST00000326004 NT5DC3Q86UY8 548 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 COMMD7Q86VX2 200 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 PDPNQ86YL7 162 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 ORMDL3Q8N138 153 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 Q8N402 240 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 LRRC18Q8N456 261 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 C12orf29Q8N999 325 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 ZIC4Q8N9L1 334 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 ZNF555Q8NEP9 628 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 OR4P4Q8NGL7 312 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 FAM172AQ8WUF8 416 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 KLF6Q99612 283 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-201ENST00000326004 PRSS27Q9BQR3 290 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 TMEM208Q9BTX3 173 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 MND1Q9BWT6 205 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 ZNF436Q9C0F3 470 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-201ENST00000326004 OR51V1Q9H2C8 321 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 MS4A6AQ9H2W1 248 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 SPANXB1Q9NS25 103 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-201ENST00000326004 DMAC2Q9NW81 257 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 FAM206AQ9NX38 181 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 BABAM2Q9NXR7 383 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 TAS2R5Q9NYW4 299 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 TAS2R1Q9NYW7 299 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 TMEM216Q9P0N5 145 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 RWDD2AQ9UIY3 292 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 SNX12Q9UMY4 172 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 MMACHCQ9Y4U1 282 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 AP4S1Q9Y587 144 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 ZNF706Q9Y5V0 76 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-201ENST00000326004 ALG5Q9Y673 324 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 SPEF2Q9C093 1822 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 MICAL3Q7RTP6 2002 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 HIVEP1P15822 2718 aa1.74□□□□□ -2.13
HMGB1-201ENST00000326004 FLNAP21333 2647 aaKnown RBP1.73□□□□□ -2.13
HMGB1-201ENST00000326004 NAV1Q8NEY1 1877 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 CSMD1Q96PZ7 3565 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 ATAD5Q96QE3 1844 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 NUP205Q92621 2012 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 SIPA1L3O60292 1781 aaPredicted RBP1.73□□□□□ -2.13
HMGB1-201ENST00000326004 IGHV2-26A0A0B4J1V2 119 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 RFPL4AA6NLU0 287 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 CD300LBA8K4G0 201 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 C21orf140B9A014 251 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 TMEM238C9JI98 176 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 LRRN3E7EW58 273 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 RFPL4AL1F8VTS6 287 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 G3V2T6 193 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 ARPC5O15511 151 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 TGOLN2O43493 480 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 SLC37A4O43826 429 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 MRPS14O60783 128 aaKnown RBP1.73□□□□□ -2.13
HMGB1-201ENST00000326004 KCNK2O95069 426 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms