RNA–Protein interactions for RNA: ENST00000308354.11

PDLIM2-202, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,236 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-202ENST00000308354 RXFP4Q8TDU9 374 aa18.24■□□□□ 0.51
PDLIM2-202ENST00000308354 ST6GALNAC6Q969X2 333 aa18.24■□□□□ 0.51
PDLIM2-202ENST00000308354 RPS10P5Q9NQ39 176 aa18.24■□□□□ 0.51
PDLIM2-202ENST00000308354 ONECUT1Q9UBC0 465 aa18.24■□□□□ 0.51
PDLIM2-202ENST00000308354 TIMM9Q9Y5J7 89 aa18.24■□□□□ 0.51
PDLIM2-202ENST00000308354 DOPEY1Q5JWR5 2465 aa18.24■□□□□ 0.51
PDLIM2-202ENST00000308354 IGKV1D-33P01593 117 aa18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 IGKV1-33P01594 117 aa18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 ARG1P05089 322 aa18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 SNRNP70P08621 437 aaKnown RBP18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 COX7A1P24310 79 aa18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 ACSM6Q6P461 480 aa18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 OR52E5Q8NH55 327 aa18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 GNG13Q9P2W3 67 aa18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 IGHV2-26A0A0B4J1V2 119 aa18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 OPN1MWP04001 364 aa18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 SRP19P09132 144 aaKnown RBP18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 OPN1MW2P0DN77 364 aa18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 OPN1MW3P0DN78 364 aa18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 CEBPGP53567 150 aa18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 VWC2Q2TAL6 325 aa18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 CENPVQ7Z7K6 275 aaPredicted RBP18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 MBD3L1Q8WWY6 194 aa18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 TMEM186Q96B77 213 aa18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 HEYLQ9NQ87 328 aaPredicted RBP18.23■□□□□ 0.51
PDLIM2-202ENST00000308354 C15orf61A6NNL5 157 aa18.22■□□□□ 0.51
PDLIM2-202ENST00000308354 IFNA10P01566 189 aa18.22■□□□□ 0.51
PDLIM2-202ENST00000308354 C8orf31Q8N9H6 132 aa18.22■□□□□ 0.51
PDLIM2-202ENST00000308354 OR5AN1Q8NGI8 311 aa18.22■□□□□ 0.51
PDLIM2-202ENST00000308354 NABP2Q9BQ15 211 aa18.22■□□□□ 0.51
PDLIM2-202ENST00000308354 PATZ1Q9HBE1 687 aaKnown RBP18.22■□□□□ 0.51
PDLIM2-202ENST00000308354 TCF19Q9Y242 345 aa18.22■□□□□ 0.51
PDLIM2-202ENST00000308354 C7orf77A4D0Y5 90 aa18.22■□□□□ 0.51
PDLIM2-202ENST00000308354 APOA2P02652 100 aa18.22■□□□□ 0.51
PDLIM2-202ENST00000308354 VDAC2P45880 294 aaPredicted RBP18.22■□□□□ 0.51
PDLIM2-202ENST00000308354 PDLIM3Q53GG5 364 aaPredicted RBP18.22■□□□□ 0.51
PDLIM2-202ENST00000308354 ZNF429Q86V71 674 aa18.22■□□□□ 0.51
PDLIM2-202ENST00000308354 RPP25LQ8N5L8 163 aaKnown RBP18.22■□□□□ 0.51
PDLIM2-202ENST00000308354 CLCC1Q96S66 551 aa18.22■□□□□ 0.51
PDLIM2-202ENST00000308354 NPCDR1Q9BY65 106 aa18.22■□□□□ 0.51
PDLIM2-202ENST00000308354 IGHV3-72A0A0B4J1Y9 119 aa18.21■□□□□ 0.51
PDLIM2-202ENST00000308354 GPR6P46095 362 aaPredicted RBP18.21■□□□□ 0.51
PDLIM2-202ENST00000308354 ARF6P62330 175 aa18.21■□□□□ 0.51
PDLIM2-202ENST00000308354 TGIF2LXQ8IUE1 241 aa18.21■□□□□ 0.51
PDLIM2-202ENST00000308354 CYB561D1Q8N8Q1 229 aa18.21■□□□□ 0.51
PDLIM2-202ENST00000308354 HINT2Q9BX68 163 aa18.21■□□□□ 0.51
PDLIM2-202ENST00000308354 ZFP92A6NM28 416 aa18.21■□□□□ 0.5
PDLIM2-202ENST00000308354 RRHO14718 337 aa18.21■□□□□ 0.5
PDLIM2-202ENST00000308354 HSPB1P04792 205 aaKnown RBP18.21■□□□□ 0.5
PDLIM2-202ENST00000308354 SAA1P0DJI8 122 aaPredicted RBP18.21■□□□□ 0.5
PDLIM2-202ENST00000308354 HARBI1Q96MB7 349 aa18.21■□□□□ 0.5
PDLIM2-202ENST00000308354 PUS1Q9Y606 427 aaKnown RBP eCLIP18.21■□□□□ 0.5
PDLIM2-202ENST00000308354 LOC102723971A0A1B0GUV8 181 aa18.2■□□□□ 0.5
PDLIM2-202ENST00000308354 A0A1W2PPH5 198 aa18.2■□□□□ 0.5
PDLIM2-202ENST00000308354 MAP1LC3B2A6NCE7 125 aa18.2■□□□□ 0.5
PDLIM2-202ENST00000308354 HOXA1P49639 335 aaPredicted RBP18.2■□□□□ 0.5
PDLIM2-202ENST00000308354 POU2AF1Q16633 256 aa18.2■□□□□ 0.5
PDLIM2-202ENST00000308354 C8orf46Q8TAG6 207 aa18.2■□□□□ 0.5
PDLIM2-202ENST00000308354 SSBP3Q9BWW4 388 aaPredicted RBP18.2■□□□□ 0.5
PDLIM2-202ENST00000308354 MAP1LC3BQ9GZQ8 125 aa18.2■□□□□ 0.5
PDLIM2-202ENST00000308354 SMCO4Q9NRQ5 59 aa18.2■□□□□ 0.5
PDLIM2-202ENST00000308354 TMEM14BQ9NUH8 114 aa18.2■□□□□ 0.5
PDLIM2-202ENST00000308354 MED13LQ71F56 2210 aa18.19■□□□□ 0.5
PDLIM2-202ENST00000308354 LIPFP07098 398 aa18.19■□□□□ 0.5
PDLIM2-202ENST00000308354 KHDC3LQ587J8 217 aa18.19■□□□□ 0.5
PDLIM2-202ENST00000308354 LY6G5BQ8NDX9 201 aa18.19■□□□□ 0.5
PDLIM2-202ENST00000308354 LHX4Q969G2 390 aa18.19■□□□□ 0.5
PDLIM2-202ENST00000308354 FLYWCH2Q96CP2 140 aaKnown RBP18.19■□□□□ 0.5
PDLIM2-202ENST00000308354 SIRT7Q9NRC8 400 aa18.19■□□□□ 0.5
PDLIM2-202ENST00000308354 LY86O95711 162 aa18.19■□□□□ 0.5
PDLIM2-202ENST00000308354 IGLV1-47P01700 117 aa18.19■□□□□ 0.5
PDLIM2-202ENST00000308354 MDKP21741 143 aaPredicted RBP18.19■□□□□ 0.5
PDLIM2-202ENST00000308354 EFNA4P52798 201 aa18.19■□□□□ 0.5
PDLIM2-202ENST00000308354 TMEM170AQ8WVE7 144 aa18.19■□□□□ 0.5
PDLIM2-202ENST00000308354 CLEC7AQ9BXN2 247 aa18.19■□□□□ 0.5
PDLIM2-202ENST00000308354 FOXA2Q9Y261 457 aaPredicted RBP18.19■□□□□ 0.5
PDLIM2-202ENST00000308354 OR51B2Q9Y5P1 312 aa18.19■□□□□ 0.5
PDLIM2-202ENST00000308354 ZNF137PP52743 207 aa18.18■□□□□ 0.5
PDLIM2-202ENST00000308354 RPP30P78346 268 aaKnown RBP18.18■□□□□ 0.5
PDLIM2-202ENST00000308354 HLA-DRB5Q30154 266 aa18.18■□□□□ 0.5
PDLIM2-202ENST00000308354 FFAR4Q5NUL3 377 aa18.18■□□□□ 0.5
PDLIM2-202ENST00000308354 Q8N7P7 452 aa18.18■□□□□ 0.5
PDLIM2-202ENST00000308354 RITA1Q96K30 269 aa18.18■□□□□ 0.5
PDLIM2-202ENST00000308354 SLC25A22Q9H936 323 aa18.18■□□□□ 0.5
PDLIM2-202ENST00000308354 UPK2O00526 184 aa18.18■□□□□ 0.5
PDLIM2-202ENST00000308354 HMGB3O15347 200 aaKnown RBP18.18■□□□□ 0.5
PDLIM2-202ENST00000308354 IL6RP08887 468 aaPredicted RBP18.18■□□□□ 0.5
PDLIM2-202ENST00000308354 BCL2P10415 239 aa18.18■□□□□ 0.5
PDLIM2-202ENST00000308354 CD1BP29016 333 aa18.18■□□□□ 0.5
PDLIM2-202ENST00000308354 HSPE1P61604 102 aaKnown RBP18.18■□□□□ 0.5
PDLIM2-202ENST00000308354 PNKDQ8N490 385 aa18.18■□□□□ 0.5
PDLIM2-202ENST00000308354 OSR1Q8TAX0 266 aaPredicted RBP18.18■□□□□ 0.5
PDLIM2-202ENST00000308354 UNKLQ9H9P5 680 aaKnown RBP18.18■□□□□ 0.5
PDLIM2-202ENST00000308354 LOC105371242A0A075B767 164 aa18.17■□□□□ 0.5
PDLIM2-202ENST00000308354 PRRX1P54821 245 aa18.17■□□□□ 0.5
PDLIM2-202ENST00000308354 ZNF843Q8N446 348 aa18.17■□□□□ 0.5
PDLIM2-202ENST00000308354 ZNF709Q8N972 641 aa18.17■□□□□ 0.5
PDLIM2-202ENST00000308354 SLC39A9Q9NUM3 307 aa18.17■□□□□ 0.5
PDLIM2-202ENST00000308354 SVEP1Q4LDE5 3571 aa18.17■□□□□ 0.5
PDLIM2-202ENST00000308354 COLCA2A8K830 154 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms