RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 C19orf35Q6ZS72 473 aa10.98□□□□□ -0.65
CCDC88B-201ENST00000301897 MGLLQ99685 303 aa10.98□□□□□ -0.65
CCDC88B-201ENST00000301897 SRSF8Q9BRL6 282 aaKnown RBP10.98□□□□□ -0.65
CCDC88B-201ENST00000301897 SELENOKQ9Y6D0 94 aa10.98□□□□□ -0.65
CCDC88B-201ENST00000301897 S4R3C0 116 aa10.98□□□□□ -0.65
CCDC88B-201ENST00000301897 A0A1B0GW64 132 aa10.97□□□□□ -0.65
CCDC88B-201ENST00000301897 MFSD2BA6NFX1 497 aa10.97□□□□□ -0.65
CCDC88B-201ENST00000301897 MYL9P24844 172 aa10.97□□□□□ -0.65
CCDC88B-201ENST00000301897 PTBP1P26599 531 aaKnown RBP eCLIP10.97□□□□□ -0.65
CCDC88B-201ENST00000301897 GPR183P32249 361 aa10.97□□□□□ -0.65
CCDC88B-201ENST00000301897 EWSR1Q01844 656 aaKnown RBP eCLIP10.97□□□□□ -0.65
CCDC88B-201ENST00000301897 CDNFQ49AH0 187 aa10.97□□□□□ -0.65
CCDC88B-201ENST00000301897 HACD4Q5VWC8 232 aa10.97□□□□□ -0.65
CCDC88B-201ENST00000301897 UNQ9165/PRO28630Q6UXU0 137 aa10.97□□□□□ -0.65
CCDC88B-201ENST00000301897 MFSD4AQ8N468 514 aa10.97□□□□□ -0.65
CCDC88B-201ENST00000301897 ZNF502Q8TBZ5 544 aa10.97□□□□□ -0.65
CCDC88B-201ENST00000301897 ZNF436Q9C0F3 470 aaPredicted RBP10.97□□□□□ -0.65
CCDC88B-201ENST00000301897 CCDC90BQ9GZT6 254 aa10.97□□□□□ -0.65
CCDC88B-201ENST00000301897 C6orf62Q9GZU0 229 aaPredicted RBP10.97□□□□□ -0.65
CCDC88B-201ENST00000301897 ATG5Q9H1Y0 275 aa10.97□□□□□ -0.65
CCDC88B-201ENST00000301897 BET1LQ9NYM9 111 aa10.97□□□□□ -0.65
CCDC88B-201ENST00000301897 SPATA2Q9UM82 520 aa10.97□□□□□ -0.65
CCDC88B-201ENST00000301897 IGKV1D-13A0A0B4J2D9 117 aa10.96□□□□□ -0.65
CCDC88B-201ENST00000301897 OR4C46A6NHA9 309 aa10.96□□□□□ -0.65
CCDC88B-201ENST00000301897 SCGNO76038 276 aa10.96□□□□□ -0.65
CCDC88B-201ENST00000301897 IGLV2-14P01704 120 aa10.96□□□□□ -0.65
CCDC88B-201ENST00000301897 FGF2P09038 288 aa10.96□□□□□ -0.65
CCDC88B-201ENST00000301897 IGKV1-13P0DP09 117 aa10.96□□□□□ -0.65
CCDC88B-201ENST00000301897 RAB3BP20337 219 aa10.96□□□□□ -0.65
CCDC88B-201ENST00000301897 OR10A3P58181 314 aa10.96□□□□□ -0.65
CCDC88B-201ENST00000301897 EIF4EBP1Q13541 118 aaPredicted RBP10.96□□□□□ -0.65
CCDC88B-201ENST00000301897 MSMO1Q15800 293 aa10.96□□□□□ -0.65
CCDC88B-201ENST00000301897 PRSS48Q7RTY5 328 aa10.96□□□□□ -0.65
CCDC88B-201ENST00000301897 RPP25LQ8N5L8 163 aaKnown RBP10.96□□□□□ -0.65
CCDC88B-201ENST00000301897 PHLDA1Q8WV24 401 aaPredicted RBP10.96□□□□□ -0.65
CCDC88B-201ENST00000301897 GALNT14Q96FL9 552 aa10.96□□□□□ -0.65
CCDC88B-201ENST00000301897 ATP6V0BQ99437 205 aa10.96□□□□□ -0.65
CCDC88B-201ENST00000301897 DAZ1Q9NQZ3 744 aaKnown RBP10.96□□□□□ -0.65
CCDC88B-201ENST00000301897 RBFOX2O43251 390 aaKnown RBP eCLIP10.95□□□□□ -0.663e-7■■■■■ 64.4
CCDC88B-201ENST00000301897 REG1AP05451 166 aa10.95□□□□□ -0.66
CCDC88B-201ENST00000301897 TIMM50Q3ZCQ8 353 aa10.95□□□□□ -0.66
CCDC88B-201ENST00000301897 THOC7Q6I9Y2 204 aaKnown RBP10.95□□□□□ -0.66
CCDC88B-201ENST00000301897 SPSB3Q6PJ21 355 aa10.95□□□□□ -0.66
CCDC88B-201ENST00000301897 SSX9Q7RTT3 188 aa10.95□□□□□ -0.66
CCDC88B-201ENST00000301897 VN1R17PQ8TDU5 208 aa10.95□□□□□ -0.66
CCDC88B-201ENST00000301897 NRG4Q8WWG1 115 aa10.95□□□□□ -0.66
CCDC88B-201ENST00000301897 TMEM190Q8WZ59 177 aa10.95□□□□□ -0.66
CCDC88B-201ENST00000301897 HRASLSQ9HDD0 168 aa10.95□□□□□ -0.66
CCDC88B-201ENST00000301897 TAS2R8Q9NYW2 309 aa10.95□□□□□ -0.66
CCDC88B-201ENST00000301897 ELF5Q9UKW6 265 aaPredicted RBP10.95□□□□□ -0.66
CCDC88B-201ENST00000301897 HECTD4Q9Y4D8 3996 aa10.95□□□□□ -0.66
CCDC88B-201ENST00000301897 TGOLN2O43493 480 aa10.94□□□□□ -0.66
CCDC88B-201ENST00000301897 BRWD1-AS2P59051 145 aa10.94□□□□□ -0.66
CCDC88B-201ENST00000301897 TAS2R31P59538 309 aa10.94□□□□□ -0.66
CCDC88B-201ENST00000301897 OR2B8PP59922 312 aa10.94□□□□□ -0.66
CCDC88B-201ENST00000301897 HSD17B13Q7Z5P4 300 aaPredicted RBP10.94□□□□□ -0.66
CCDC88B-201ENST00000301897 ZBTB34Q8NCN2 500 aa10.94□□□□□ -0.66
CCDC88B-201ENST00000301897 GATAD1Q8WUU5 269 aa10.94□□□□□ -0.66
CCDC88B-201ENST00000301897 BSCL2Q96G97 398 aaPredicted RBP10.94□□□□□ -0.66
CCDC88B-201ENST00000301897 COMMD5Q9GZQ3 224 aa10.94□□□□□ -0.66
CCDC88B-201ENST00000301897 MFFQ9GZY8 342 aa10.94□□□□□ -0.66
CCDC88B-201ENST00000301897 UBQLN2Q9UHD9 624 aa10.94□□□□□ -0.66
CCDC88B-201ENST00000301897 ANXA10Q9UJ72 324 aa10.94□□□□□ -0.66
CCDC88B-201ENST00000301897 HERC2O95714 4834 aa10.94□□□□□ -0.66
CCDC88B-201ENST00000301897 IGLC7A0M8Q6 106 aa10.93□□□□□ -0.66
CCDC88B-201ENST00000301897 CMC4P56277 68 aaPredicted RBP10.93□□□□□ -0.66
CCDC88B-201ENST00000301897 GNG2P59768 71 aa10.93□□□□□ -0.66
CCDC88B-201ENST00000301897 ODF3L2Q3SX64 289 aa10.93□□□□□ -0.66
CCDC88B-201ENST00000301897 QTRT1Q9BXR0 403 aaKnown RBP10.93□□□□□ -0.66
CCDC88B-201ENST00000301897 MAP6D1Q9H9H5 199 aa10.93□□□□□ -0.66
CCDC88B-201ENST00000301897 IGHV3-35A0A0C4DH35 117 aa10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 TRDV1A0A1B0GX56 115 aa10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 CGB1A6NKQ9 187 aa10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 NDUFA4O00483 81 aa10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 DEDDO75618 318 aa10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 IFNA4P05014 189 aa10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 NQO2P16083 231 aa10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 AQP4P55087 323 aa10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 TCTAP57738 103 aa10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 ARPC4P59998 168 aa10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 CATR1Q13166 79 aa10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 TBCEQ15813 527 aaPredicted RBP10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 POU2AF1Q16633 256 aa10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 ZNF367Q7RTV3 350 aa10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 SPAG16Q8N0X2 631 aa10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 GDPD1Q8N9F7 314 aa10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 CD300LFQ8TDQ1 290 aa10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 NUDCD2Q8WVJ2 157 aa10.92□□□□□ -0.66
CCDC88B-201ENST00000301897 TMEM235A6NFC5 223 aa10.91□□□□□ -0.66
CCDC88B-201ENST00000301897 OR2T8A6NH00 312 aa10.91□□□□□ -0.66
CCDC88B-201ENST00000301897 K7EMT4 169 aa10.91□□□□□ -0.66
CCDC88B-201ENST00000301897 UPK2O00526 184 aa10.91□□□□□ -0.66
CCDC88B-201ENST00000301897 HPRT1P00492 218 aa10.91□□□□□ -0.66
CCDC88B-201ENST00000301897 RPL35AP18077 110 aaKnown RBP10.91□□□□□ -0.66
CCDC88B-201ENST00000301897 NR2C2APQ86WQ0 139 aa10.91□□□□□ -0.66
CCDC88B-201ENST00000301897 SECTM1Q8WVN6 248 aa10.91□□□□□ -0.66
CCDC88B-201ENST00000301897 CSTL1Q9H114 145 aa10.91□□□□□ -0.66
CCDC88B-201ENST00000301897 C11orf68Q9H3H3 251 aaKnown RBP10.91□□□□□ -0.66
CCDC88B-201ENST00000301897 NDUFB11Q9NX14 153 aa10.91□□□□□ -0.66
CCDC88B-201ENST00000301897 MPTX1A8MV57 137 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms