RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SMIM15Q7Z3B0 74 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 ABHD12Q8N2K0 398 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 GNB1LQ9BYB4 327 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 KMT2EQ8IZD2 1858 aa11.21□□□□□ -0.61
SKA3-201ENST00000298260 RIF1Q5UIP0 2472 aaKnown RBP11.21□□□□□ -0.61
SKA3-201ENST00000298260 DKK1O94907 266 aa11.21□□□□□ -0.61
SKA3-201ENST00000298260 LIFP15018 202 aa11.21□□□□□ -0.61
SKA3-201ENST00000298260 SSTR5P35346 364 aa11.21□□□□□ -0.61
SKA3-201ENST00000298260 ZNF718Q3SXZ3 478 aa11.21□□□□□ -0.61
SKA3-201ENST00000298260 H2BFWTQ7Z2G1 175 aa11.21□□□□□ -0.61
SKA3-201ENST00000298260 SARAFQ96BY9 339 aa11.21□□□□□ -0.61
SKA3-201ENST00000298260 C1QTNF5Q9BXJ0 243 aa11.21□□□□□ -0.61
SKA3-201ENST00000298260 WDR83OSQ9Y284 106 aa11.21□□□□□ -0.61
SKA3-201ENST00000298260 TRAV30A0A087WSZ9 112 aa11.21□□□□□ -0.62
SKA3-201ENST00000298260 OR5B21A6NL26 309 aa11.21□□□□□ -0.62
SKA3-201ENST00000298260 LINC00473A8K010 186 aa11.21□□□□□ -0.62
SKA3-201ENST00000298260 H0Y8G0 127 aa11.21□□□□□ -0.62
SKA3-201ENST00000298260 DUX1O43812 170 aa11.21□□□□□ -0.62
SKA3-201ENST00000298260 SCRG1O75711 98 aa11.21□□□□□ -0.62
SKA3-201ENST00000298260 NEURL1O76050 574 aa11.21□□□□□ -0.62
SKA3-201ENST00000298260 STAG3L2P0CL84 134 aa11.21□□□□□ -0.62
SKA3-201ENST00000298260 STAG3L3P0CL85 134 aa11.21□□□□□ -0.62
SKA3-201ENST00000298260 RPL8P62917 257 aaKnown RBP11.21□□□□□ -0.62
SKA3-201ENST00000298260 RNASEKQ6P5S7 137 aaKnown RBP11.21□□□□□ -0.62
SKA3-201ENST00000298260 MUC15Q8N387 334 aa11.21□□□□□ -0.62
SKA3-201ENST00000298260 SLC24A4Q8NFF2 622 aa11.21□□□□□ -0.62
SKA3-201ENST00000298260 OR4P4Q8NGL7 312 aa11.21□□□□□ -0.62
SKA3-201ENST00000298260 RFESDQ8TAC1 157 aa11.21□□□□□ -0.62
SKA3-201ENST00000298260 CPT1CQ8TCG5 803 aa11.21□□□□□ -0.62
SKA3-201ENST00000298260 NUDT11Q96G61 164 aa11.21□□□□□ -0.62
SKA3-201ENST00000298260 ZNF716A6NP11 495 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 FAM166BA8MTA8 275 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 SNAI2O43623 268 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 OR2H2O95918 312 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 GCHFRP30047 84 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 TET2Q6N021 2002 aaPredicted RBP11.2□□□□□ -0.62
SKA3-201ENST00000298260 C18orf32Q8TCD1 76 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 SPSB4Q96A44 273 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 NAA38Q9BRA0 125 aaKnown RBP11.2□□□□□ -0.62
SKA3-201ENST00000298260 TRAV9-2A0A087WT02 112 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 LMO7DNF2Z398 122 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 M0R2Z0 102 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 OR9G9P0C7N8 305 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 RFPL3SP0C7P2 107 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 CCR5P51681 352 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 CX3CL1P78423 397 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 ARG2P78540 354 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 DCAF12Q5T6F0 453 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 C17orf82Q86X59 251 aaPredicted RBP11.2□□□□□ -0.62
SKA3-201ENST00000298260 STPG3Q8N7X2 389 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 OR2Y1Q8NGV0 311 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 MAFAQ8NHW3 353 aaPredicted RBP11.2□□□□□ -0.62
SKA3-201ENST00000298260 LINC00479Q96M42 142 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 PMCHL2Q9BQD1 86 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 GCM1Q9NP62 436 aa11.2□□□□□ -0.62
SKA3-201ENST00000298260 TIMM8BQ9Y5J9 83 aaPredicted RBP11.2□□□□□ -0.62
SKA3-201ENST00000298260 ARFGEF3Q5TH69 2177 aa11.19□□□□□ -0.62
SKA3-201ENST00000298260 FAM181BA6NEQ2 426 aa11.19□□□□□ -0.62
SKA3-201ENST00000298260 FAM90A26D6RGX4 464 aa11.19□□□□□ -0.62
SKA3-201ENST00000298260 HSBP1O75506 76 aa11.19□□□□□ -0.62
SKA3-201ENST00000298260 KCNE4Q8WWG9 221 aa11.19□□□□□ -0.62
SKA3-201ENST00000298260 CHRNA10Q9GZZ6 450 aa11.19□□□□□ -0.62
SKA3-201ENST00000298260 MEGF9Q9H1U4 602 aa11.19□□□□□ -0.62
SKA3-201ENST00000298260 RAB29O14966 203 aa11.19□□□□□ -0.62
SKA3-201ENST00000298260 P0C879 139 aa11.19□□□□□ -0.62
SKA3-201ENST00000298260 SRD5A2P31213 254 aa11.19□□□□□ -0.62
SKA3-201ENST00000298260 GNG4P50150 75 aa11.19□□□□□ -0.62
SKA3-201ENST00000298260 VWC2Q2TAL6 325 aa11.19□□□□□ -0.62
SKA3-201ENST00000298260 GGTLC1Q9BX51 225 aa11.19□□□□□ -0.62
SKA3-201ENST00000298260 ARL2-SNX15V9GYD0 113 aa11.19□□□□□ -0.62
SKA3-201ENST00000298260 TNCP24821 2201 aa11.19□□□□□ -0.62
SKA3-201ENST00000298260 LRP5LA4QPB2 252 aa11.18□□□□□ -0.62
SKA3-201ENST00000298260 CXorf1O96002 111 aa11.18□□□□□ -0.62
SKA3-201ENST00000298260 APCSP02743 223 aa11.18□□□□□ -0.62
SKA3-201ENST00000298260 OR10J4P0C629 311 aa11.18□□□□□ -0.62
SKA3-201ENST00000298260 RAC1P63000 192 aa11.18□□□□□ -0.62
SKA3-201ENST00000298260 SRYQ05066 204 aa11.18□□□□□ -0.62
SKA3-201ENST00000298260 OR10J3Q5JRS4 329 aa11.18□□□□□ -0.62
SKA3-201ENST00000298260 Q6P435 159 aa11.18□□□□□ -0.62
SKA3-201ENST00000298260 OR8B2Q96RD0 313 aa11.18□□□□□ -0.62
SKA3-201ENST00000298260 TRAV3A0A0B4J244 114 aa11.18□□□□□ -0.62
SKA3-201ENST00000298260 TRAV8-6A0A0B4J262 113 aa11.18□□□□□ -0.62
SKA3-201ENST00000298260 IGHV1OR15-9A0A0B4J2B8 117 aa11.18□□□□□ -0.62
SKA3-201ENST00000298260 USF1P22415 310 aaPredicted RBP11.18□□□□□ -0.62
SKA3-201ENST00000298260 WIPI1Q5MNZ9 446 aaPredicted RBP11.18□□□□□ -0.62
SKA3-201ENST00000298260 GDF5OSQ5U4N7 250 aa11.18□□□□□ -0.62
SKA3-201ENST00000298260 OR10D3Q8NH80 312 aa11.18□□□□□ -0.62
SKA3-201ENST00000298260 C1orf159Q96HA4 380 aa11.18□□□□□ -0.62
SKA3-201ENST00000298260 ZNF391Q9UJN7 358 aa11.18□□□□□ -0.62
SKA3-201ENST00000298260 CNOT1A5YKK6 2376 aaKnown RBP11.18□□□□□ -0.62
SKA3-201ENST00000298260 HELTA6NFD8 242 aa11.17□□□□□ -0.62
SKA3-201ENST00000298260 NPY1RP25929 384 aa11.17□□□□□ -0.62
SKA3-201ENST00000298260 EFNB3Q15768 340 aa11.17□□□□□ -0.62
SKA3-201ENST00000298260 MIR17HGQ75NE6 70 aa11.17□□□□□ -0.62
SKA3-201ENST00000298260 CXorf67Q86X51 503 aaPredicted RBP11.17□□□□□ -0.62
SKA3-201ENST00000298260 RARRES3Q9UL19 164 aa11.17□□□□□ -0.62
SKA3-201ENST00000298260 A0A087X0K7 114 aa11.17□□□□□ -0.62
SKA3-201ENST00000298260 GAGE12BA1L429 117 aa11.17□□□□□ -0.62
SKA3-201ENST00000298260 GABRA2P47869 451 aa11.17□□□□□ -0.62
SKA3-201ENST00000298260 CAMPP49913 170 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 1279.5 ms