RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 IL6RP08887 468 aaPredicted RBP19.59■□□□□ 0.73
TRIM54-201ENST00000296098 SNRPEP62304 92 aaKnown RBP19.59■□□□□ 0.73
TRIM54-201ENST00000296098 GCSAMLQ5JQS6 135 aa19.59■□□□□ 0.73
TRIM54-201ENST00000296098 ZNF343Q6P1L6 599 aa19.59■□□□□ 0.73
TRIM54-201ENST00000296098 LYPD2Q6UXB3 125 aa19.59■□□□□ 0.73
TRIM54-201ENST00000296098 Q8WTZ3 238 aa19.59■□□□□ 0.73
TRIM54-201ENST00000296098 GATAD1Q8WUU5 269 aa19.59■□□□□ 0.73
TRIM54-201ENST00000296098 SMIM7Q9BQ49 75 aa19.59■□□□□ 0.73
TRIM54-201ENST00000296098 GGTLC1Q9BX51 225 aa19.59■□□□□ 0.73
TRIM54-201ENST00000296098 ZNF257Q9Y2Q1 563 aa19.59■□□□□ 0.73
TRIM54-201ENST00000296098 UPK2O00526 184 aa19.58■□□□□ 0.73
TRIM54-201ENST00000296098 TNFRSF13BO14836 293 aaPredicted RBP19.58■□□□□ 0.73
TRIM54-201ENST00000296098 C1QL4Q86Z23 238 aa19.58■□□□□ 0.73
TRIM54-201ENST00000296098 RAB1CQ92928 201 aa19.58■□□□□ 0.73
TRIM54-201ENST00000296098 HINT2Q9BX68 163 aa19.58■□□□□ 0.73
TRIM54-201ENST00000296098 MRPL20Q9BYC9 149 aaKnown RBP19.58■□□□□ 0.73
TRIM54-201ENST00000296098 KCNIP2Q9NS61 270 aa19.58■□□□□ 0.73
TRIM54-201ENST00000296098 NAT8Q9UHE5 227 aa19.58■□□□□ 0.73
TRIM54-201ENST00000296098 MYOD1P15172 320 aa19.58■□□□□ 0.72
TRIM54-201ENST00000296098 CASP6P55212 293 aa19.58■□□□□ 0.72
TRIM54-201ENST00000296098 PXMP4Q9Y6I8 212 aa19.58■□□□□ 0.72
TRIM54-201ENST00000296098 URGCP-MRPS24S4R325 110 aa19.58■□□□□ 0.72
TRIM54-201ENST00000296098 KBTBD11O94819 623 aa19.57■□□□□ 0.72
TRIM54-201ENST00000296098 YIF1AO95070 293 aa19.57■□□□□ 0.72
TRIM54-201ENST00000296098 CA2P00918 260 aa19.57■□□□□ 0.72
TRIM54-201ENST00000296098 APOA2P02652 100 aa19.57■□□□□ 0.72
TRIM54-201ENST00000296098 CYP2G1PQ6ZSU1 146 aa19.57■□□□□ 0.72
TRIM54-201ENST00000296098 OR4F5Q8NH21 305 aa19.57■□□□□ 0.72
TRIM54-201ENST00000296098 OR4F4Q96R69 305 aa19.57■□□□□ 0.72
TRIM54-201ENST00000296098 PLEKHA3Q9HB20 300 aa19.57■□□□□ 0.72
TRIM54-201ENST00000296098 NPVFQ9HCQ7 196 aa19.57■□□□□ 0.72
TRIM54-201ENST00000296098 TMEM242Q9NWH2 141 aa19.57■□□□□ 0.72
TRIM54-201ENST00000296098 CTSZQ9UBR2 303 aa19.57■□□□□ 0.72
TRIM54-201ENST00000296098 PCNX1Q96RV3 2341 aa19.56■□□□□ 0.72
TRIM54-201ENST00000296098 A0A1W2PPV4 95 aa19.56■□□□□ 0.72
TRIM54-201ENST00000296098 C5orf52A6NGY3 159 aa19.56■□□□□ 0.72
TRIM54-201ENST00000296098 CD3EP07766 207 aa19.56■□□□□ 0.72
TRIM54-201ENST00000296098 PRCDQ00LT1 54 aa19.56■□□□□ 0.72
TRIM54-201ENST00000296098 EFNB3Q15768 340 aa19.56■□□□□ 0.72
TRIM54-201ENST00000296098 ZNF674Q2M3X9 581 aa19.56■□□□□ 0.72
TRIM54-201ENST00000296098 ARSJQ5FYB0 599 aaPredicted RBP19.56■□□□□ 0.72
TRIM54-201ENST00000296098 LSM4Q9Y4Z0 139 aaKnown RBP19.56■□□□□ 0.72
TRIM54-201ENST00000296098 CEP295Q9C0D2 2601 aa19.56■□□□□ 0.72
TRIM54-201ENST00000296098 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP19.56■□□□□ 0.72
TRIM54-201ENST00000296098 SRRM4A7MD48 611 aaKnown RBP19.56■□□□□ 0.72
TRIM54-201ENST00000296098 J3QR06 171 aa19.56■□□□□ 0.72
TRIM54-201ENST00000296098 DVL1O14640 695 aa19.56■□□□□ 0.72
TRIM54-201ENST00000296098 PAGE4O60829 102 aa19.56■□□□□ 0.72
TRIM54-201ENST00000296098 APOBEC3AP31941 199 aaPredicted RBP19.56■□□□□ 0.72
TRIM54-201ENST00000296098 RPS10P46783 165 aaKnown RBP19.56■□□□□ 0.72
TRIM54-201ENST00000296098 UCNP55089 124 aa19.56■□□□□ 0.72
TRIM54-201ENST00000296098 TMEM249Q2WGJ8 235 aa19.56■□□□□ 0.72
TRIM54-201ENST00000296098 RPUSD4Q96CM3 377 aaKnown RBP19.56■□□□□ 0.72
TRIM54-201ENST00000296098 BET1LQ9NYM9 111 aa19.56■□□□□ 0.72
TRIM54-201ENST00000296098 CXCL1P09341 107 aa19.55■□□□□ 0.72
TRIM54-201ENST00000296098 SAA1P0DJI8 122 aaPredicted RBP19.55■□□□□ 0.72
TRIM54-201ENST00000296098 MIC13Q5XKP0 118 aa19.55■□□□□ 0.72
TRIM54-201ENST00000296098 OSR1Q8TAX0 266 aaPredicted RBP19.55■□□□□ 0.72
TRIM54-201ENST00000296098 PATZ1Q9HBE1 687 aaKnown RBP19.55■□□□□ 0.72
TRIM54-201ENST00000296098 PTPRQQ9UMZ3 2332 aa19.55■□□□□ 0.72
TRIM54-201ENST00000296098 LOXP28300 417 aaPredicted RBP19.54■□□□□ 0.72
TRIM54-201ENST00000296098 KAAG1Q9UBP8 84 aa19.54■□□□□ 0.72
TRIM54-201ENST00000296098 DCHS1Q96JQ0 3298 aa19.54■□□□□ 0.72
TRIM54-201ENST00000296098 IGHV1-69-2A0A0G2JMI3 117 aa19.54■□□□□ 0.72
TRIM54-201ENST00000296098 B9A039 149 aa19.54■□□□□ 0.72
TRIM54-201ENST00000296098 H0YJW9 148 aa19.54■□□□□ 0.72
TRIM54-201ENST00000296098 CLDN34H7C241 214 aa19.54■□□□□ 0.72
TRIM54-201ENST00000296098 UBE2CO00762 179 aa19.54■□□□□ 0.72
TRIM54-201ENST00000296098 TMEM241Q24JQ0 296 aa19.54■□□□□ 0.72
TRIM54-201ENST00000296098 NEIL1Q96FI4 390 aaPredicted RBP19.54■□□□□ 0.72
TRIM54-201ENST00000296098 PARLQ9H300 379 aa19.54■□□□□ 0.72
TRIM54-201ENST00000296098 FKBP11Q9NYL4 201 aa19.54■□□□□ 0.72
TRIM54-201ENST00000296098 TGIF2-C20orf24A0A0A6YYL0 155 aa19.53■□□□□ 0.72
TRIM54-201ENST00000296098 RND2P52198 227 aa19.53■□□□□ 0.72
TRIM54-201ENST00000296098 ADIRFQ15847 76 aa19.53■□□□□ 0.72
TRIM54-201ENST00000296098 TEPPQ6URK8 271 aa19.53■□□□□ 0.72
TRIM54-201ENST00000296098 OR10X1Q8NGY0 326 aa19.53■□□□□ 0.72
TRIM54-201ENST00000296098 C1orf159Q96HA4 380 aa19.53■□□□□ 0.72
TRIM54-201ENST00000296098 HARBI1Q96MB7 349 aa19.53■□□□□ 0.72
TRIM54-201ENST00000296098 FAM90A27PA6NNH2 459 aa19.52■□□□□ 0.72
TRIM54-201ENST00000296098 CA7P43166 264 aa19.52■□□□□ 0.72
TRIM54-201ENST00000296098 FAM71F2Q6NXP2 309 aa19.52■□□□□ 0.72
TRIM54-201ENST00000296098 C8orf31Q8N9H6 132 aa19.52■□□□□ 0.72
TRIM54-201ENST00000296098 OR5AN1Q8NGI8 311 aa19.52■□□□□ 0.72
TRIM54-201ENST00000296098 CTDSP1Q9GZU7 261 aa19.52■□□□□ 0.72
TRIM54-201ENST00000296098 RAXQ9Y2V3 346 aa19.52■□□□□ 0.72
TRIM54-201ENST00000296098 C11orf94C9JXX5 98 aa19.52■□□□□ 0.72
TRIM54-201ENST00000296098 FNDC10F2Z333 226 aa19.52■□□□□ 0.72
TRIM54-201ENST00000296098 OPN1MWP04001 364 aa19.52■□□□□ 0.72
TRIM54-201ENST00000296098 OPN1MW2P0DN77 364 aa19.52■□□□□ 0.72
TRIM54-201ENST00000296098 OPN1MW3P0DN78 364 aa19.52■□□□□ 0.72
TRIM54-201ENST00000296098 OR5B3Q8NH48 314 aa19.52■□□□□ 0.72
TRIM54-201ENST00000296098 SSMEM1Q8WWF3 244 aa19.52■□□□□ 0.72
TRIM54-201ENST00000296098 TEX50A0A1B0GTY4 177 aa19.51■□□□□ 0.71
TRIM54-201ENST00000296098 B2MP61769 119 aa19.51■□□□□ 0.71
TRIM54-201ENST00000296098 RAB31Q13636 194 aa19.51■□□□□ 0.71
TRIM54-201ENST00000296098 LINC00311Q8N616 119 aa19.51■□□□□ 0.71
TRIM54-201ENST00000296098 ZNF596Q8TC21 504 aa19.51■□□□□ 0.71
TRIM54-201ENST00000296098 METTL1Q9UBP6 276 aaKnown RBP19.51■□□□□ 0.71
TRIM54-201ENST00000296098 IGHV2-5P01817 119 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms