RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 OR10X1Q8NGY0 326 aa12.51□□□□□ -0.41
SF3B4-201ENST00000271628 OR9G1Q8NH87 305 aa12.51□□□□□ -0.41
SF3B4-201ENST00000271628 ZDHHC16Q969W1 377 aa12.51□□□□□ -0.41
SF3B4-201ENST00000271628 PINX1Q96BK5 328 aaKnown RBP12.51□□□□□ -0.41
SF3B4-201ENST00000271628 RPRMQ9NS64 109 aa12.51□□□□□ -0.41
SF3B4-201ENST00000271628 SLC35D1Q9NTN3 355 aa12.51□□□□□ -0.41
SF3B4-201ENST00000271628 SOD3P08294 240 aa12.5□□□□□ -0.41
SF3B4-201ENST00000271628 IGHV1-8P0DP01 117 aa12.5□□□□□ -0.41
SF3B4-201ENST00000271628 SLC38A11Q08AI6 406 aa12.5□□□□□ -0.41
SF3B4-201ENST00000271628 ARL16Q0P5N6 197 aa12.5□□□□□ -0.41
SF3B4-201ENST00000271628 PNRC1Q12796 327 aaPredicted RBP12.5□□□□□ -0.41
SF3B4-201ENST00000271628 VKORC1L1Q8N0U8 176 aa12.5□□□□□ -0.41
SF3B4-201ENST00000271628 OR10P1Q8NGE3 313 aa12.5□□□□□ -0.41
SF3B4-201ENST00000271628 HIVEP3Q5T1R4 2406 aa12.5□□□□□ -0.41
SF3B4-201ENST00000271628 TPRP12270 2363 aaKnown RBP12.5□□□□□ -0.41
SF3B4-201ENST00000271628 PPIHO43447 177 aaKnown RBP12.5□□□□□ -0.41
SF3B4-201ENST00000271628 APOA2P02652 100 aa12.5□□□□□ -0.41
SF3B4-201ENST00000271628 RPS10P46783 165 aaKnown RBP12.5□□□□□ -0.41
SF3B4-201ENST00000271628 ELOBQ15370 118 aa12.5□□□□□ -0.41
SF3B4-201ENST00000271628 OR8B3Q8NGG8 313 aa12.5□□□□□ -0.41
SF3B4-201ENST00000271628 NANPQ8TBE9 248 aa12.5□□□□□ -0.41
SF3B4-201ENST00000271628 TNFRSF14Q92956 283 aa12.5□□□□□ -0.41
SF3B4-201ENST00000271628 OR8B2Q96RD0 313 aa12.5□□□□□ -0.41
SF3B4-201ENST00000271628 P2RX4Q99571 388 aa12.5□□□□□ -0.41
SF3B4-201ENST00000271628 TMEM242Q9NWH2 141 aa12.5□□□□□ -0.41
SF3B4-201ENST00000271628 GNG13Q9P2W3 67 aa12.5□□□□□ -0.41
SF3B4-201ENST00000271628 FBP1P09467 338 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 GNB2P62879 340 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 PMS2P11Q13670 270 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 ZNF787Q6DD87 383 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 OR8G2PQ6IF36 304 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 OR4A47Q6IF82 309 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 HAPLN4Q86UW8 402 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 OR13D1Q8NGV5 346 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 NEIL1Q96FI4 390 aaPredicted RBP12.49□□□□□ -0.41
SF3B4-201ENST00000271628 RSG1Q9BU20 258 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 C15orf61A6NNL5 157 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 ZNF727A8MUV8 499 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 RBP4P02753 201 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 BCL2P10415 239 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 IL3RAP26951 378 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 ZNF137PP52743 207 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 ABHD12Q8N2K0 398 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 C11orf42Q8N5U0 333 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 OSR1Q8TAX0 266 aaPredicted RBP12.49□□□□□ -0.41
SF3B4-201ENST00000271628 OR4C12Q96R67 309 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 WDR61Q9GZS3 305 aaKnown RBP12.49□□□□□ -0.41
SF3B4-201ENST00000271628 TMEM133Q9H2Q1 129 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 TMPRSS5Q9H3S3 457 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 CHODLQ9H9P2 273 aa12.49□□□□□ -0.41
SF3B4-201ENST00000271628 FOXA2Q9Y261 457 aaPredicted RBP12.49□□□□□ -0.41
SF3B4-201ENST00000271628 ABCA4P78363 2273 aa12.48□□□□□ -0.41
SF3B4-201ENST00000271628 PMS2P5A8MQ11 134 aa12.48□□□□□ -0.41
SF3B4-201ENST00000271628 SLC16A13Q7RTY0 426 aa12.48□□□□□ -0.41
SF3B4-201ENST00000271628 OR5AN1Q8NGI8 311 aa12.48□□□□□ -0.41
SF3B4-201ENST00000271628 TMEM14BQ9NUH8 114 aa12.48□□□□□ -0.41
SF3B4-201ENST00000271628 ZNRD1Q9P1U0 126 aa12.48□□□□□ -0.41
SF3B4-201ENST00000271628 DOCK11Q5JSL3 2073 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 PPIAL4CA0A0B4J2A2 164 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 PPIAL4GP0DN37 164 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 KIAA0141Q14154 515 aaPredicted RBP12.47□□□□□ -0.41
SF3B4-201ENST00000271628 TMEM41BQ5BJD5 291 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 FAM90A2PQ658T7 463 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 C8orf46Q8TAG6 207 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 Q8WTZ3 238 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 HEYLQ9NQ87 328 aaPredicted RBP12.47□□□□□ -0.41
SF3B4-201ENST00000271628 NIT2Q9NQR4 276 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 PRNDQ9UKY0 176 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 IFNA1P01562 189 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 IGKV1-16P04430 117 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 IL6RP08887 468 aaPredicted RBP12.47□□□□□ -0.41
SF3B4-201ENST00000271628 HOXA5P20719 270 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 PRRX1P54821 245 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 HSPE1P61604 102 aaKnown RBP12.47□□□□□ -0.41
SF3B4-201ENST00000271628 RAB11AP62491 216 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 WDR25Q64LD2 544 aaPredicted RBP12.47□□□□□ -0.41
SF3B4-201ENST00000271628 TAF15Q92804 592 aaKnown RBP eCLIP12.47□□□□□ -0.41
SF3B4-201ENST00000271628 ST6GALNAC6Q969X2 333 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 RCC1LQ96I51 464 aaKnown RBP12.47□□□□□ -0.41
SF3B4-201ENST00000271628 PCGF1Q9BSM1 259 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 TMEM147Q9BVK8 224 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 FKBP11Q9NYL4 201 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 VAX2Q9UIW0 290 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 TIMM9Q9Y5J7 89 aa12.47□□□□□ -0.41
SF3B4-201ENST00000271628 HRNRQ86YZ3 2850 aaPredicted RBP12.46□□□□□ -0.41
SF3B4-201ENST00000271628 TRAV3A0A0B4J244 114 aa12.46□□□□□ -0.41
SF3B4-201ENST00000271628 ZFP92A6NM28 416 aa12.46□□□□□ -0.41
SF3B4-201ENST00000271628 CLN5O75503 358 aa12.46□□□□□ -0.41
SF3B4-201ENST00000271628 FABP1P07148 127 aa12.46□□□□□ -0.41
SF3B4-201ENST00000271628 ZNF726P1Q15940 193 aa12.46□□□□□ -0.41
SF3B4-201ENST00000271628 SPINK9Q5DT21 86 aa12.46□□□□□ -0.41
SF3B4-201ENST00000271628 LCN15Q6UWW0 184 aa12.46□□□□□ -0.41
SF3B4-201ENST00000271628 CENPVQ7Z7K6 275 aaPredicted RBP12.46□□□□□ -0.41
SF3B4-201ENST00000271628 PDPNQ86YL7 162 aa12.46□□□□□ -0.41
SF3B4-201ENST00000271628 OR4C13Q8NGP0 309 aa12.46□□□□□ -0.41
SF3B4-201ENST00000271628 LHX4Q969G2 390 aa12.46□□□□□ -0.41
SF3B4-201ENST00000271628 MRPL20Q9BYC9 149 aaKnown RBP12.46□□□□□ -0.41
SF3B4-201ENST00000271628 BET1LQ9NYM9 111 aa12.46□□□□□ -0.41
SF3B4-201ENST00000271628 TCF19Q9Y242 345 aa12.46□□□□□ -0.41
SF3B4-201ENST00000271628 ZNF257Q9Y2Q1 563 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms