RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 WDR82Q6UXN9 313 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 ACP7Q6ZNF0 438 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 FDCSPQ8NFU4 85 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 OR1L6Q8NGR2 347 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 IMMP2LQ96T52 175 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 OR6C3Q9NZP0 311 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 RIF1Q5UIP0 2472 aaKnown RBP8.34□□□□□ -1.07
LIG3-201ENST00000262327 TRBV20OR9-2A0A075B6H5 130 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 PIGBOS1A0A0B4J2F0 54 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 NKX6-3A6NJ46 265 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 KLK10O43240 276 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 SCGB1D1O95968 90 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 ARL14EPLP0DKL9 152 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 TNFSF10P50591 281 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 PTTG1IPP53801 180 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 EIF4EBP1Q13541 118 aaPredicted RBP8.34□□□□□ -1.07
LIG3-201ENST00000262327 PRAMEF5Q5TYX0 476 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 LINC01551Q86U37 167 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 Q8N7P7 452 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 TMEM170AQ8WVE7 144 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 HINT2Q9BX68 163 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 MANBALQ9NQG1 85 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 DKK4Q9UBT3 224 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 SCO2A0A1W2PP80 73 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 M0R1X1 148 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 WNT2P09544 360 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 FRMD6-AS1P0C7T7 363 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 ATP6V1FQ16864 119 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 ACOT6Q3I5F7 207 aaPredicted RBP8.33□□□□□ -1.08
LIG3-201ENST00000262327 SPRNQ5BIV9 151 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 FAM201AQ5SY85 155 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 SPATA31B1PQ5VZV4 182 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 CENPVQ7Z7K6 275 aaPredicted RBP8.33□□□□□ -1.08
LIG3-201ENST00000262327 CD177Q8N6Q3 437 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 SGMS2Q8NHU3 365 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 Q8TCH9 128 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 SEPSECSQ9HD40 501 aaKnown RBP8.33□□□□□ -1.08
LIG3-201ENST00000262327 DUSP13Q9UII6 198 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 TRAPPC1Q9Y5R8 145 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 PLCE1Q9P212 2302 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 KIR2DL5BA0A0G2JN68 375 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 KIR2DL5BA0A0G2JPC4 375 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 IQCF6A8MYZ5 107 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 RAB29O14966 203 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 GCH1P30793 250 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 GPR12P47775 334 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 IQCJQ1A5X6 159 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 ACSF3Q4G176 576 aaPredicted RBP8.33□□□□□ -1.08
LIG3-201ENST00000262327 ACTL10Q5JWF8 245 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 KIR2DL5AQ8N109 375 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 LRRC29Q8WV35 223 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 POLR3KQ9Y2Y1 108 aaPredicted RBP8.33□□□□□ -1.08
LIG3-201ENST00000262327 A0A1W2PN81 502 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 SLC17A3O00476 420 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 SPINK4O60575 86 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 RAB7AP51149 207 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 SELENOTP62341 195 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 SLC35E4Q6ICL7 350 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 ZNRF1Q8ND25 227 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 MS4A5Q9H3V2 200 aa8.33□□□□□ -1.08
LIG3-201ENST00000262327 TET2Q6N021 2002 aaPredicted RBP8.32□□□□□ -1.08
LIG3-201ENST00000262327 CUL9Q8IWT3 2517 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 TRAV17A0A0B4J275 112 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 C17orf112F2Z3M2 114 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 CNN1P51911 297 aaKnown RBP8.32□□□□□ -1.08
LIG3-201ENST00000262327 GABRA6Q16445 453 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 PDLIM3Q53GG5 364 aaPredicted RBP8.32□□□□□ -1.08
LIG3-201ENST00000262327 ASPHD1Q5U4P2 390 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 C1orf229Q6ZS94 237 aaPredicted RBP8.32□□□□□ -1.08
LIG3-201ENST00000262327 OR2Z1Q8NG97 314 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 OR4A16Q8NH70 328 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 ANAPC16Q96DE5 110 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 DMXL1Q9Y485 3027 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 K7EP13 123 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 FOXH1O75593 365 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 ACTL6BO94805 426 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 CHRNB4P30926 498 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 ZNF134P52741 427 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 IGFL3Q6UXB1 125 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 TREML4Q6UXN2 200 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 TGIF2LYQ8IUE0 185 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 LYG1Q8N1E2 194 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 CLUHP3Q96NS8 147 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 TAAR6Q96RI8 345 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 VPS25Q9BRG1 176 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 HES4Q9HCC6 221 aa8.32□□□□□ -1.08
LIG3-201ENST00000262327 CBLN1P23435 193 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 DUTP33316 252 aaKnown RBP8.31□□□□□ -1.08
LIG3-201ENST00000262327 HLA-DRB5Q30154 266 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 KCNIP4Q6PIL6 250 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 ZBTB34Q8NCN2 500 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 TMEM18Q96B42 140 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 CIB3Q96Q77 187 aaPredicted RBP8.31□□□□□ -1.08
LIG3-201ENST00000262327 MGST2Q99735 147 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 WDR83OSQ9Y284 106 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 PXMP4Q9Y6I8 212 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 SPINT2O43291 252 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 HPRT1P00492 218 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 CECR9P0C854 216 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 KLF3P57682 345 aaPredicted RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms