RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 M6PRP20645 277 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 HLA-DRB5Q30154 266 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 NMSQ5H8A3 153 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 OR4D5Q8NGN0 318 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 TAF15Q92804 592 aaKnown RBP eCLIP9.53□□□□□ -0.88
VPS4A-201ENST00000254950 IFI27L2Q9H2X8 130 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 KLF2Q9Y5W3 355 aaPredicted RBP9.53□□□□□ -0.88
VPS4A-201ENST00000254950 NCKAP5O14513 1909 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 RAB19A4D1S5 217 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 RNASEK-C17orf49H0YIS7 233 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 ATF4P18848 351 aaPredicted RBP9.53□□□□□ -0.88
VPS4A-201ENST00000254950 SULT1A2P50226 295 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 CLEC12BQ2HXU8 276 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 SPNS3Q6ZMD2 512 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 RSG1Q9BU20 258 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 REV3LO60673 3130 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 MOSP00540 346 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 FBP1P09467 338 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 SCGB2A2Q13296 93 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 RNF2Q99496 336 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 C15orf65H3BRN8 121 aa9.52□□□□□ -0.88
VPS4A-201ENST00000254950 DVL1P1P54792 670 aaPredicted RBP9.52□□□□□ -0.88
VPS4A-201ENST00000254950 FXYD3Q14802 87 aa9.52□□□□□ -0.88
VPS4A-201ENST00000254950 DAZAP2Q15038 168 aaPredicted RBP9.52□□□□□ -0.88
VPS4A-201ENST00000254950 OR4A5Q8NH83 315 aa9.52□□□□□ -0.88
VPS4A-201ENST00000254950 DOK5Q9P104 306 aa9.52□□□□□ -0.88
VPS4A-201ENST00000254950 PTPRBP23467 1997 aa9.52□□□□□ -0.89
VPS4A-201ENST00000254950 FAM90A9PA6NNJ1 464 aa9.52□□□□□ -0.89
VPS4A-201ENST00000254950 LINC00473A8K010 186 aa9.52□□□□□ -0.89
VPS4A-201ENST00000254950 IGKV1-5P01602 117 aa9.52□□□□□ -0.89
VPS4A-201ENST00000254950 NMBP08949 121 aa9.52□□□□□ -0.89
VPS4A-201ENST00000254950 C17orf58Q2M2W7 97 aa9.52□□□□□ -0.89
VPS4A-201ENST00000254950 TIMM23O14925 209 aa9.52□□□□□ -0.89
VPS4A-201ENST00000254950 ORM2P19652 201 aa9.52□□□□□ -0.89
VPS4A-201ENST00000254950 PRTN3P24158 256 aa9.52□□□□□ -0.89
VPS4A-201ENST00000254950 UBE2G2P60604 165 aa9.52□□□□□ -0.89
VPS4A-201ENST00000254950 TMEM41BQ5BJD5 291 aa9.52□□□□□ -0.89
VPS4A-201ENST00000254950 C15orf61A6NNL5 157 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 ZNF727A8MUV8 499 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 WNT2P09544 360 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 SLC25A16P16260 332 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 FAM78BQ5VT40 261 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 CRIP3Q6Q6R5 217 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 FRYQ5TBA9 3013 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 CTXND1A0A1B0GTU2 59 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 LINC00862A6NCI5 91 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 B4DSR2 109 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 CA2P00918 260 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 OR10J1P30954 320 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 LYZP61626 148 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 UNQ5815/PRO19632Q6UWF5 114 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 ZNF383Q8NA42 475 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 RPUSD4Q96CM3 377 aaKnown RBP9.51□□□□□ -0.89
VPS4A-201ENST00000254950 PFDN5Q99471 154 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 HSPB7Q9UBY9 170 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 ARHGAP21Q5T5U3 1957 aa9.51□□□□□ -0.89
VPS4A-201ENST00000254950 IGHV3-21A0A0B4J1V1 117 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 OOSP1A8MZH6 123 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 K7EQM0 130 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 OR9G9P0C7N8 305 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 SELENOTP62341 195 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 DLK1P80370 383 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 SRSF4Q08170 494 aaKnown RBP9.5□□□□□ -0.89
VPS4A-201ENST00000254950 ADIRFQ15847 76 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 LY6EQ16553 131 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 VMO1Q7Z5L0 202 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 OR2T6Q8NHC8 308 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 SERTAD4Q9NUC0 356 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 TECRQ9NZ01 308 aaKnown RBP9.5□□□□□ -0.89
VPS4A-201ENST00000254950 A0A0U1RQK1 487 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 NDUFS7O75251 213 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 FGF8P55075 233 aaPredicted RBP9.5□□□□□ -0.89
VPS4A-201ENST00000254950 RPL11P62913 178 aaKnown RBP9.5□□□□□ -0.89
VPS4A-201ENST00000254950 KLRD1Q13241 179 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 MINOS1Q5TGZ0 78 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 FAM71F2Q6NXP2 309 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 DPPA3Q6W0C5 159 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 TEX45Q8NA69 505 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 CLDND2Q8NHS1 167 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 CYYR1Q96J86 154 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 PXMP4Q9Y6I8 212 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 MINOS1-NBL1R4GNA1 71 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 NBR2O15453 112 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 IGHV2-70P01814 119 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 REG1AP05451 166 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 RND2P52198 227 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 FAM53AQ6NSI3 398 aaPredicted RBP9.5□□□□□ -0.89
VPS4A-201ENST00000254950 OR4X1Q8NH49 305 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 NABP2Q9BQ15 211 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 SMIM7Q9BQ49 75 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 BET1LQ9NYM9 111 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 TNRC18O15417 2968 aaPredicted RBP9.5□□□□□ -0.89
VPS4A-201ENST00000254950 CSN1S1P47710 185 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 ZNF585BQ52M93 769 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 TPTE2P1Q5T6R2 138 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 PPP1R27Q86WC6 154 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 Q8WTZ3 238 aa9.5□□□□□ -0.89
VPS4A-201ENST00000254950 DAZAP1Q96EP5 407 aaKnown RBP9.5□□□□□ -0.89
VPS4A-201ENST00000254950 GAR1Q9NY12 217 aaKnown RBP9.5□□□□□ -0.89
VPS4A-201ENST00000254950 CTSZQ9UBR2 303 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms