RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 VDAC2P45880 294 aaPredicted RBP11.35□□□□□ -0.59
LDLR-201ENST00000252444 SPINK9Q5DT21 86 aa11.35□□□□□ -0.59
LDLR-201ENST00000252444 Q8NFD4 153 aa11.35□□□□□ -0.59
LDLR-201ENST00000252444 MBNL3Q9NUK0 354 aaKnown RBP11.35□□□□□ -0.59
LDLR-201ENST00000252444 G3V3Q6 166 aa11.34□□□□□ -0.59
LDLR-201ENST00000252444 SSMEM1Q8WWF3 244 aa11.34□□□□□ -0.59
LDLR-201ENST00000252444 ZNF320A2RRD8 509 aa11.34□□□□□ -0.59
LDLR-201ENST00000252444 RND2P52198 227 aa11.34□□□□□ -0.59
LDLR-201ENST00000252444 HOXA4Q00056 320 aaPredicted RBP11.34□□□□□ -0.59
LDLR-201ENST00000252444 TMEM167AQ8TBQ9 72 aa11.34□□□□□ -0.59
LDLR-201ENST00000252444 AP1S3Q96PC3 154 aa11.34□□□□□ -0.59
LDLR-201ENST00000252444 PARD6GQ9BYG4 376 aaPredicted RBP11.34□□□□□ -0.59
LDLR-201ENST00000252444 URB1O60287 2271 aaKnown RBP11.34□□□□□ -0.59
LDLR-201ENST00000252444 IGKV1-27A0A075B6S5 117 aa11.34□□□□□ -0.59
LDLR-201ENST00000252444 TMEM218A2RU14 115 aa11.34□□□□□ -0.59
LDLR-201ENST00000252444 RRHO14718 337 aa11.34□□□□□ -0.59
LDLR-201ENST00000252444 LILRA1O75019 489 aa11.34□□□□□ -0.59
LDLR-201ENST00000252444 BSXQ3C1V8 233 aa11.34□□□□□ -0.59
LDLR-201ENST00000252444 OR2T8A6NH00 312 aa11.34□□□□□ -0.59
LDLR-201ENST00000252444 RPL39P5Q59GN2 51 aa11.34□□□□□ -0.59
LDLR-201ENST00000252444 A0A0A6YYD4 124 aa11.33□□□□□ -0.59
LDLR-201ENST00000252444 TDGF1P3P51864 188 aa11.33□□□□□ -0.59
LDLR-201ENST00000252444 TMEM78Q5T7P6 136 aa11.33□□□□□ -0.59
LDLR-201ENST00000252444 SYT8Q8NBV8 401 aa11.33□□□□□ -0.59
LDLR-201ENST00000252444 OR4C12Q96R67 309 aa11.33□□□□□ -0.59
LDLR-201ENST00000252444 YTHDF2Q9Y5A9 579 aaKnown RBP11.33□□□□□ -0.59
LDLR-201ENST00000252444 MLNRO43193 412 aa11.33□□□□□ -0.6
LDLR-201ENST00000252444 SNRPD3P62318 126 aaKnown RBP11.33□□□□□ -0.6
LDLR-201ENST00000252444 SLC7A5P1Q8MH63 180 aa11.33□□□□□ -0.6
LDLR-201ENST00000252444 CD177Q8N6Q3 437 aa11.33□□□□□ -0.6
LDLR-201ENST00000252444 HIST1H2BAQ96A08 127 aa11.33□□□□□ -0.6
LDLR-201ENST00000252444 OR10C1Q96KK4 312 aa11.33□□□□□ -0.6
LDLR-201ENST00000252444 KLHDC3Q9BQ90 382 aa11.33□□□□□ -0.6
LDLR-201ENST00000252444 TMEM200BQ69YZ2 307 aa11.33□□□□□ -0.6
LDLR-201ENST00000252444 OR5AC2Q9NZP5 309 aa11.33□□□□□ -0.6
LDLR-201ENST00000252444 P01737 135 aa11.33□□□□□ -0.6
LDLR-201ENST00000252444 RNF212Q495C1 297 aa11.33□□□□□ -0.6
LDLR-201ENST00000252444 SPSB3Q6PJ21 355 aa11.33□□□□□ -0.6
LDLR-201ENST00000252444 TMEM144Q7Z5S9 345 aa11.33□□□□□ -0.6
LDLR-201ENST00000252444 DMRTC2Q8IXT2 367 aaPredicted RBP11.33□□□□□ -0.6
LDLR-201ENST00000252444 OR10G8Q8NGN5 311 aa11.33□□□□□ -0.6
LDLR-201ENST00000252444 C21orf62Q9NYP8 219 aa11.33□□□□□ -0.6
LDLR-201ENST00000252444 ERVK11-1P61568 191 aa11.33□□□□□ -0.6
LDLR-201ENST00000252444 ZNF880Q6PDB4 577 aa11.33□□□□□ -0.6
LDLR-201ENST00000252444 RAX2Q96IS3 184 aa11.33□□□□□ -0.6
LDLR-201ENST00000252444 SCN2AQ99250 2005 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 A1L4Q6 167 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 UBE2E1P51965 193 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 SAPCD1Q5SSQ6 148 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 LRP11Q86VZ4 500 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 TRGV3P03979 118 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 TPPP2P59282 170 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 RPL30P62888 115 aaKnown RBP11.32□□□□□ -0.6
LDLR-201ENST00000252444 C2orf83Q53S99 150 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 NR2C2APQ86WQ0 139 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 SLC50A1Q9BRV3 221 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 SH3BGRL3Q9H299 93 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 ZDBF2Q9HCK1 2354 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 C17orf98A8MV24 154 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 OR9G9P0C7N8 305 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 DANCRP0C864 163 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 HSPB7Q9UBY9 170 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 PTPRZ1P23471 2315 aaPredicted RBP11.32□□□□□ -0.6
LDLR-201ENST00000252444 CA2P00918 260 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 SRSF4Q08170 494 aaKnown RBP11.32□□□□□ -0.6
LDLR-201ENST00000252444 BTN1A1Q13410 526 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 GAMTQ14353 236 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 GBGT1Q8N5D6 347 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 BLNKQ8WV28 456 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 USMG5Q96IX5 58 aa11.32□□□□□ -0.6
LDLR-201ENST00000252444 PARP12Q9H0J9 701 aaKnown RBP11.32□□□□□ -0.6
LDLR-201ENST00000252444 FAM223BA6NKX1 122 aa11.31□□□□□ -0.6
LDLR-201ENST00000252444 SAA1P0DJI8 122 aaPredicted RBP11.31□□□□□ -0.6
LDLR-201ENST00000252444 VMO1Q7Z5L0 202 aa11.31□□□□□ -0.6
LDLR-201ENST00000252444 FAM223AQ8IWN6 122 aa11.31□□□□□ -0.6
LDLR-201ENST00000252444 DOK5Q9P104 306 aa11.31□□□□□ -0.6
LDLR-201ENST00000252444 BRWD1Q9NSI6 2320 aa11.31□□□□□ -0.6
LDLR-201ENST00000252444 RP1P56715 2156 aa11.31□□□□□ -0.6
LDLR-201ENST00000252444 NPFFO15130 113 aa11.31□□□□□ -0.6
LDLR-201ENST00000252444 MT-ND6P03923 174 aa11.31□□□□□ -0.6
LDLR-201ENST00000252444 OR1P1Q8NH06 330 aa11.31□□□□□ -0.6
LDLR-201ENST00000252444 TPPP3Q9BW30 176 aa11.31□□□□□ -0.6
LDLR-201ENST00000252444 OR51M1Q9H341 326 aa11.31□□□□□ -0.6
LDLR-201ENST00000252444 FUT9Q9Y231 359 aa11.31□□□□□ -0.6
LDLR-201ENST00000252444 TMEM250H0YL14 139 aa11.31□□□□□ -0.6
LDLR-201ENST00000252444 FSTL3O95633 263 aa11.31□□□□□ -0.6
LDLR-201ENST00000252444 WDFY1Q8IWB7 410 aa11.3□□□□□ -0.6
LDLR-201ENST00000252444 FBXL7Q9UJT9 491 aa11.3□□□□□ -0.6
LDLR-201ENST00000252444 CACNA1EQ15878 2313 aa11.3□□□□□ -0.6
LDLR-201ENST00000252444 ISLRO14498 428 aa11.3□□□□□ -0.6
LDLR-201ENST00000252444 ID3Q02535 119 aa11.3□□□□□ -0.6
LDLR-201ENST00000252444 C16orf92Q96LL3 132 aa11.3□□□□□ -0.6
LDLR-201ENST00000252444 ZNF586Q9NXT0 402 aa11.3□□□□□ -0.6
LDLR-201ENST00000252444 PRR13Q9NZ81 148 aa11.3□□□□□ -0.6
LDLR-201ENST00000252444 ZNF600Q6ZNG1 722 aa11.3□□□□□ -0.6
LDLR-201ENST00000252444 IGKV1D-17A0A075B6S4 117 aa11.3□□□□□ -0.6
LDLR-201ENST00000252444 IGHV3-72A0A0B4J1Y9 119 aa11.3□□□□□ -0.6
LDLR-201ENST00000252444 TMEM208Q9BTX3 173 aa11.3□□□□□ -0.6
LDLR-201ENST00000252444 VENTXO95231 258 aa11.29□□□□□ -0.6
LDLR-201ENST00000252444 RPL29P47914 159 aaKnown RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms