RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 TMEM177Q53S58 311 aa3.89□□□□□ -1.79
VPS13C-201ENST00000249837 C10orf113Q5VZT2 155 aa3.89□□□□□ -1.79
VPS13C-201ENST00000249837 NPCDR1Q9BY65 106 aa3.89□□□□□ -1.79
VPS13C-201ENST00000249837 ONECUT1Q9UBC0 465 aa3.89□□□□□ -1.79
VPS13C-201ENST00000249837 ERVFRD-1P60508 538 aa3.89□□□□□ -1.79
VPS13C-201ENST00000249837 CTAG1AP78358 180 aa3.89□□□□□ -1.79
VPS13C-201ENST00000249837 ABLIM2Q6H8Q1 611 aa3.89□□□□□ -1.79
VPS13C-201ENST00000249837 ZNF645Q8N7E2 425 aa3.89□□□□□ -1.79
VPS13C-201ENST00000249837 PRSS3P2Q8NHM4 247 aa3.89□□□□□ -1.79
VPS13C-201ENST00000249837 SFRP2Q96HF1 295 aa3.89□□□□□ -1.79
VPS13C-201ENST00000249837 HARBI1Q96MB7 349 aa3.89□□□□□ -1.79
VPS13C-201ENST00000249837 CEP295Q9C0D2 2601 aa3.89□□□□□ -1.79
VPS13C-201ENST00000249837 IL6RP08887 468 aaPredicted RBP3.89□□□□□ -1.79
VPS13C-201ENST00000249837 OR5AL1P0C617 328 aa3.89□□□□□ -1.79
VPS13C-201ENST00000249837 ZNF71Q9NQZ8 489 aaPredicted RBP3.89□□□□□ -1.79
VPS13C-201ENST00000249837 AMMECR1Q9Y4X0 333 aaPredicted RBP3.89□□□□□ -1.79
VPS13C-201ENST00000249837 ABCA2Q9BZC7 2435 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 SCO2A0A1W2PP80 73 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 MKRN2OSH3BPM6 223 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 SELLP14151 372 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 LHX2P50458 406 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 CCL8P80075 99 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 ST6GALNAC3Q8NDV1 305 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 GATA2P23769 480 aaPredicted RBP3.88□□□□□ -1.79
VPS13C-201ENST00000249837 OR8G5Q8NG78 346 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 ST6GALNAC6Q969X2 333 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 A0A087WWC5 75 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 M0QZK8 103 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 GGCTO75223 188 aaKnown RBP3.88□□□□□ -1.79
VPS13C-201ENST00000249837 PCSK4Q6UW60 755 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 USP9YO00507 2555 aaPredicted RBP3.88□□□□□ -1.79
VPS13C-201ENST00000249837 PIEZO1Q92508 2521 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 IGHV3-72A0A0B4J1Y9 119 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 TNFRSF1AP19438 455 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 PRNTQ86SH4 94 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 OR8A1Q8NGG7 326 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 DEPPQ9NTK1 212 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 HPRT1P00492 218 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 TMEM45BQ96B21 275 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 PGLYRP4Q96LB8 373 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 LINC00470Q9BZP3 86 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 NPVFQ9HCQ7 196 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 ANAPC10Q9UM13 185 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 HIVEP2P31629 2446 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 TRIP6Q15654 476 aaKnown RBP3.88□□□□□ -1.79
VPS13C-201ENST00000249837 KRTCAP3Q53RY4 240 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 NMSQ5H8A3 153 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 PYY3Q5JQD4 70 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 CYP2G1PQ6ZSU1 146 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 TGIF2LYQ8IUE0 185 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 RPEQ96AT9 228 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 GAL3ST2Q9H3Q3 398 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 ZFYVE26Q68DK2 2539 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 A0A1B0GW64 132 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 FAM157AC9JC47 383 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 TMEM50AO95807 157 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 CD81P60033 236 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 B3GALT5-AS1P59052 145 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 SPSB3Q6PJ21 355 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 CALYQ9NYX4 217 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 ZNF785A8K8V0 405 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 PRR33A8MZF0 331 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 CECR9P0C854 216 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 HIST1H1BP16401 226 aaKnown RBP3.88□□□□□ -1.79
VPS13C-201ENST00000249837 HSPE1P61604 102 aaKnown RBP3.88□□□□□ -1.79
VPS13C-201ENST00000249837 COL5A1-AS1Q5SY13 56 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 OR13A1Q8NGR1 328 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 SPSB4Q96A44 273 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 A0A1B0GUS0 222 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 MARCH11A6NNE9 402 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 AMBPP02760 352 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 PAFAH1B2P68402 229 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 TNXAQ16473 311 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 TMEM105Q8N8V8 129 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 DNAJC4Q9NNZ3 241 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 WASHC3Q9Y3C0 194 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 A0A0G2JRQ6 117 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 HINT1P49773 126 aaPredicted RBP3.88□□□□□ -1.79
VPS13C-201ENST00000249837 RPL31P62899 125 aaKnown RBP3.88□□□□□ -1.79
VPS13C-201ENST00000249837 PRR31Q5SQ13 230 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 ZNRF1Q8ND25 227 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 METRNQ9UJH8 293 aa3.88□□□□□ -1.79
VPS13C-201ENST00000249837 CEACAM18A8MTB9 384 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 HERPUD1Q15011 391 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 TMEM42Q69YG0 159 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 FAM122AQ96E09 287 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 IDI2-AS1Q9NZ38 188 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 HYPMO75409 117 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 COX19Q49B96 90 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 CRIM1Q9NZV1 1036 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 RNF24Q9Y225 148 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 K7EQM0 130 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 Q6P435 159 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 ACP7Q6ZNF0 438 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 SMIM15Q7Z3B0 74 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 RNF2Q99496 336 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 NDUFAF3Q9BU61 184 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 GSX1Q9H4S2 264 aaPredicted RBP3.87□□□□□ -1.79
VPS13C-201ENST00000249837 SAP30LQ9HAJ7 183 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 SEBOXQ9HB31 216 aaPredicted RBP3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms