RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 C7orf77A4D0Y5 90 aa7.09□□□□□ -1.28
VPS4B-201ENST00000238497 LRRC30A6NM36 301 aa7.09□□□□□ -1.28
VPS4B-201ENST00000238497 S100A6P06703 90 aa7.09□□□□□ -1.28
VPS4B-201ENST00000238497 TAGLN2P37802 199 aaKnown RBP7.09□□□□□ -1.28
VPS4B-201ENST00000238497 CTAG1AP78358 180 aa7.09□□□□□ -1.28
VPS4B-201ENST00000238497 FAM120AOSQ5T036 256 aa7.09□□□□□ -1.28
VPS4B-201ENST00000238497 CST9LP1Q5W188 147 aa7.09□□□□□ -1.28
VPS4B-201ENST00000238497 HIF1ANQ9NWT6 349 aa7.09□□□□□ -1.28
VPS4B-201ENST00000238497 IGLV3-9A0A075B6K5 115 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 A0A1W2PPH5 198 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 ACTL6BO94805 426 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 GCSAMLQ5JQS6 135 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 Q6ZS49 121 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 EIF4E3Q8N5X7 224 aaKnown RBP7.08□□□□□ -1.28
VPS4B-201ENST00000238497 LINC01356Q8N9X3 169 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 NECAP1Q8NC96 275 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 SEC11CQ9BY50 192 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 SLC25A10Q9UBX3 287 aaPredicted RBP7.08□□□□□ -1.28
VPS4B-201ENST00000238497 A0A096LNT2 108 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 VWC2LB2RUY7 222 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 ZNF737O75373 536 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 TNFRSF1AP19438 455 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 MDKP21741 143 aaPredicted RBP7.08□□□□□ -1.28
VPS4B-201ENST00000238497 TAS2R30P59541 319 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 FFAR4Q5NUL3 377 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 ZNF880Q6PDB4 577 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 LYPD2Q6UXB3 125 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 OR10X1Q8NGY0 326 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 PINX1Q96BK5 328 aaKnown RBP7.08□□□□□ -1.28
VPS4B-201ENST00000238497 OR6C3Q9NZP0 311 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 DYSFO75923 2080 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 NBEAL1Q6ZS30 2694 aa7.08□□□□□ -1.28
VPS4B-201ENST00000238497 A0A0U1RQK1 487 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 K7N7A8 449 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 CRYBA1P05813 215 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 OR8U8P0C7N1 319 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 PDLIM3Q53GG5 364 aaPredicted RBP7.07□□□□□ -1.28
VPS4B-201ENST00000238497 ODF3L1Q8IXM7 274 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 SLC35B3Q9H1N7 401 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 IGHV3-21A0A0B4J1V1 117 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 TRAV38-1A0A0B4J264 116 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 B4DSR2 109 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 ADH4P08319 380 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 COX7A1P24310 79 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 RPS10P46783 165 aaKnown RBP7.07□□□□□ -1.28
VPS4B-201ENST00000238497 CT45A1Q5HYN5 189 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 CT45A3Q8NHU0 189 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 GATAD1Q8WUU5 269 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 MDFIQ99750 246 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 HIPK2Q9H2X6 1198 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 TRBV6-6A0A0A6YYG2 114 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 A0A1W2PPV4 95 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 MAP1LC3B2A6NCE7 125 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 FAM157AC9JC47 383 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 IFNL4K9M1U5 179 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 PROP1O75360 226 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 HAPLN4Q86UW8 402 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 RAB39BQ96DA2 213 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 HSD17B10Q99714 261 aaKnown RBP7.07□□□□□ -1.28
VPS4B-201ENST00000238497 MAP1LC3BQ9GZQ8 125 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 HES4Q9HCC6 221 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 KPTNQ9Y664 436 aa7.07□□□□□ -1.28
VPS4B-201ENST00000238497 PPIAL4EA0A075B759 164 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 SAA2-SAA4A0A096LPE2 208 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 PPIAL4DF5H284 164 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 SAA2P0DJI9 122 aaPredicted RBP7.06□□□□□ -1.28
VPS4B-201ENST00000238497 PPIAL4FP0DN26 164 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 LMO1P25800 156 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 DUTP33316 252 aaKnown RBP7.06□□□□□ -1.28
VPS4B-201ENST00000238497 BRWD1-AS2P59051 145 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 LCN2P80188 198 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 ZNF429Q86V71 674 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 C22orf15Q8WYQ4 148 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 TMEM140Q9NV12 185 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 PPIAL4AQ9Y536 164 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 NKX6-3A6NJ46 265 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 TRIM77I1YAP6 450 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 PRB4P10163 310 aaPredicted RBP7.06□□□□□ -1.28
VPS4B-201ENST00000238497 SLC25A6P12236 298 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 RAB5CP51148 216 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 ADIRFQ15847 76 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 ZNF343Q6P1L6 599 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 C1orf229Q6ZS94 237 aaPredicted RBP7.06□□□□□ -1.28
VPS4B-201ENST00000238497 OR10G4Q8NGN3 311 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 OR10G9Q8NGN4 311 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 OR10G7Q8NGN6 311 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 OR4F5Q8NH21 305 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 TAF15Q92804 592 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS4B-201ENST00000238497 LSM10Q969L4 123 aaKnown RBP7.06□□□□□ -1.28
VPS4B-201ENST00000238497 TMEM186Q96B77 213 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 OR4F4Q96R69 305 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 IL19Q9UHD0 177 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 DUXBA0A1W2PPF3 345 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 RRHO14718 337 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 NDUFB3O43676 98 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 IGKV1-16P04430 117 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 MSMBP08118 114 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 MMP9P14780 707 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 GNB1P62873 340 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 SRSF7Q16629 238 aaKnown RBP eCLIP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms