RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 WFDC10AQ9H1F0 79 aa12.27□□□□□ -0.45
CLN3-264ENST00000637985 MRPS7Q9Y2R9 242 aaKnown RBP12.27□□□□□ -0.45
CLN3-264ENST00000637985 DNAH11Q96DT5 4516 aa12.26□□□□□ -0.45
CLN3-264ENST00000637985 TRAV18A0A075B6X5 111 aa12.26□□□□□ -0.45
CLN3-264ENST00000637985 A0A0J9YWU9 116 aa12.26□□□□□ -0.45
CLN3-264ENST00000637985 MSGN1A6NI15 193 aa12.26□□□□□ -0.45
CLN3-264ENST00000637985 FCGR3BO75015 233 aa12.26□□□□□ -0.45
CLN3-264ENST00000637985 TUSC2O75896 110 aa12.26□□□□□ -0.45
CLN3-264ENST00000637985 IGLV2-14P01704 120 aa12.26□□□□□ -0.45
CLN3-264ENST00000637985 CDK10Q15131 360 aa12.26□□□□□ -0.45
CLN3-264ENST00000637985 TNXAQ16473 311 aa12.26□□□□□ -0.45
CLN3-264ENST00000637985 TIMM50Q3ZCQ8 353 aa12.26□□□□□ -0.45
CLN3-264ENST00000637985 OR2K2Q8NGT1 345 aa12.26□□□□□ -0.45
CLN3-264ENST00000637985 OR5H6Q8NGV6 325 aa12.26□□□□□ -0.45
CLN3-264ENST00000637985 SRSF12Q8WXF0 261 aaKnown RBP12.26□□□□□ -0.45
CLN3-264ENST00000637985 KCTD12Q96CX2 325 aaKnown RBP12.26□□□□□ -0.45
CLN3-264ENST00000637985 SLC25A38Q96DW6 304 aa12.26□□□□□ -0.45
CLN3-264ENST00000637985 USMG5Q96IX5 58 aa12.26□□□□□ -0.45
CLN3-264ENST00000637985 DCUN1D5Q9BTE7 237 aa12.26□□□□□ -0.45
CLN3-264ENST00000637985 SLC2A8Q9NY64 477 aa12.26□□□□□ -0.45
CLN3-264ENST00000637985 IGKV1D-13A0A0B4J2D9 117 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 ZNF785A8K8V0 405 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 OR11H12B2RN74 326 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 ACTL6BO94805 426 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 OR9G9P0C7N8 305 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 SAA1P0DJI8 122 aaPredicted RBP12.25□□□□□ -0.45
CLN3-264ENST00000637985 IGKV1-13P0DP09 117 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 ARPC4P59998 168 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 RPL30P62888 115 aaKnown RBP12.25□□□□□ -0.45
CLN3-264ENST00000637985 PRR20EP86478 221 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 PRR20CP86479 221 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 PRR20DP86480 221 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 PRR20BP86481 221 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 PRR20AP86496 221 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 TNFRSF9Q07011 255 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 IDO2Q6ZQW0 420 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 CROCCP3Q8IVE0 287 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 MMD2Q8IY49 270 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 ADAD2Q8NCV1 583 aaKnown RBP12.25□□□□□ -0.45
CLN3-264ENST00000637985 BEST4Q8NFU0 473 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 ACOT12Q8WYK0 555 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 ZNF430Q9H8G1 570 aaPredicted RBP12.25□□□□□ -0.45
CLN3-264ENST00000637985 DIABLOQ9NR28 239 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 COA4Q9NYJ1 87 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 SPATA2Q9UM82 520 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 DNAH17Q9UFH2 4485 aa12.25□□□□□ -0.45
CLN3-264ENST00000637985 ANKRD34BA5PLL1 514 aa12.24□□□□□ -0.45
CLN3-264ENST00000637985 EIF4EBP1Q13541 118 aaPredicted RBP12.24□□□□□ -0.45
CLN3-264ENST00000637985 MSMO1Q15800 293 aa12.24□□□□□ -0.45
CLN3-264ENST00000637985 ZNF343Q6P1L6 599 aa12.24□□□□□ -0.45
CLN3-264ENST00000637985 ZNF66Q6ZN08 573 aa12.24□□□□□ -0.45
CLN3-264ENST00000637985 HOGA1Q86XE5 327 aa12.24□□□□□ -0.45
CLN3-264ENST00000637985 OR4S2Q8NH73 311 aa12.24□□□□□ -0.45
CLN3-264ENST00000637985 VSTM2AQ8TAG5 236 aa12.24□□□□□ -0.45
CLN3-264ENST00000637985 SPIN2AQ99865 258 aa12.24□□□□□ -0.45
CLN3-264ENST00000637985 SPIN2BQ9BPZ2 258 aa12.24□□□□□ -0.45
CLN3-264ENST00000637985 PEF1Q9UBV8 284 aaKnown RBP12.24□□□□□ -0.45
CLN3-264ENST00000637985 ADAM30Q9UKF2 790 aa12.24□□□□□ -0.45
CLN3-264ENST00000637985 A0A1B0GVY2 172 aa12.23□□□□□ -0.45
CLN3-264ENST00000637985 MPPED1O15442 326 aa12.23□□□□□ -0.45
CLN3-264ENST00000637985 ATF4P18848 351 aaPredicted RBP12.23□□□□□ -0.45
CLN3-264ENST00000637985 CBX5P45973 191 aa12.23□□□□□ -0.45
CLN3-264ENST00000637985 DYRK1AQ13627 763 aa12.23□□□□□ -0.45
CLN3-264ENST00000637985 WFDC3Q8IUB2 231 aa12.23□□□□□ -0.45
CLN3-264ENST00000637985 MFSD4AQ8N468 514 aa12.23□□□□□ -0.45
CLN3-264ENST00000637985 TCTEX1D2Q8WW35 142 aa12.23□□□□□ -0.45
CLN3-264ENST00000637985 AUNIPQ9H7T9 357 aa12.23□□□□□ -0.45
CLN3-264ENST00000637985 FAM223BA6NKX1 122 aa12.22□□□□□ -0.45
CLN3-264ENST00000637985 OR2A4O95047 310 aa12.22□□□□□ -0.45
CLN3-264ENST00000637985 NDUFB8O95169 186 aa12.22□□□□□ -0.45
CLN3-264ENST00000637985 APELAP0DMC3 54 aa12.22□□□□□ -0.45
CLN3-264ENST00000637985 FCGR2CP31995 323 aa12.22□□□□□ -0.45
CLN3-264ENST00000637985 KIR2DS2P43631 304 aa12.22□□□□□ -0.45
CLN3-264ENST00000637985 TATDN3Q17R31 274 aa12.22□□□□□ -0.45
CLN3-264ENST00000637985 CD300EQ496F6 205 aaPredicted RBP12.22□□□□□ -0.45
CLN3-264ENST00000637985 OR2B11Q5JQS5 317 aa12.22□□□□□ -0.45
CLN3-264ENST00000637985 LYG2Q86SG7 212 aa12.22□□□□□ -0.45
CLN3-264ENST00000637985 SLC25A42Q86VD7 318 aa12.22□□□□□ -0.45
CLN3-264ENST00000637985 FAM223AQ8IWN6 122 aa12.22□□□□□ -0.45
CLN3-264ENST00000637985 TTC9CQ8N5M4 171 aa12.22□□□□□ -0.45
CLN3-264ENST00000637985 GVQW1Q8N7I0 195 aa12.22□□□□□ -0.45
CLN3-264ENST00000637985 ZBTB34Q8NCN2 500 aa12.22□□□□□ -0.45
CLN3-264ENST00000637985 OR2A7Q96R45 310 aa12.22□□□□□ -0.45
CLN3-264ENST00000637985 VCX3AQ9NNX9 186 aa12.22□□□□□ -0.45
CLN3-264ENST00000637985 A0A087WXM4 84 aa12.21□□□□□ -0.45
CLN3-264ENST00000637985 TRBV9A0A0B4J1U6 114 aa12.21□□□□□ -0.45
CLN3-264ENST00000637985 XRCC3O43542 346 aa12.21□□□□□ -0.45
CLN3-264ENST00000637985 AIREO43918 545 aa12.21□□□□□ -0.45
CLN3-264ENST00000637985 KBTBD11O94819 623 aa12.21□□□□□ -0.45
CLN3-264ENST00000637985 MAS1LP35410 378 aa12.21□□□□□ -0.45
CLN3-264ENST00000637985 LINC00336Q6ZUF6 198 aa12.21□□□□□ -0.45
CLN3-264ENST00000637985 PUSL1Q8N0Z8 303 aaKnown RBP12.21□□□□□ -0.45
CLN3-264ENST00000637985 TMEM167AQ8TBQ9 72 aa12.21□□□□□ -0.45
CLN3-264ENST00000637985 SNAPC3Q92966 411 aa12.21□□□□□ -0.45
CLN3-264ENST00000637985 S100A16Q96FQ6 103 aaKnown RBP12.21□□□□□ -0.45
CLN3-264ENST00000637985 AIFM2Q9BRQ8 373 aa12.21□□□□□ -0.45
CLN3-264ENST00000637985 TAS2R8Q9NYW2 309 aa12.21□□□□□ -0.45
CLN3-264ENST00000637985 TNFAIP8O95379 198 aa12.2□□□□□ -0.46
CLN3-264ENST00000637985 HRASP01112 189 aa12.2□□□□□ -0.46
CLN3-264ENST00000637985 PPYP01298 95 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms