RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 CLINT1Q14677 625 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 CLLU1Q5K131 121 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 SPANXN5Q5MJ07 72 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 FAM74A1Q5RGS3 127 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 MOB3BQ86TA1 216 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 STX12Q86Y82 276 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 PUSL1Q8N0Z8 303 aaKnown RBP13.63□□□□□ -0.23
CLN3-252ENST00000636907 OR5C1Q8NGR4 320 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 BET1LQ9NYM9 111 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 FOXA2Q9Y261 457 aaPredicted RBP13.63□□□□□ -0.23
CLN3-252ENST00000636907 POLR3KQ9Y2Y1 108 aaPredicted RBP13.63□□□□□ -0.23
CLN3-252ENST00000636907 SPG11Q96JI7 2443 aa13.62□□□□□ -0.23
CLN3-252ENST00000636907 A0A1W2PRD5 423 aa13.62□□□□□ -0.23
CLN3-252ENST00000636907 A0A1W2PRF3 423 aa13.62□□□□□ -0.23
CLN3-252ENST00000636907 A0A1W2PRM7 423 aa13.62□□□□□ -0.23
CLN3-252ENST00000636907 LEUTXA8MZ59 168 aa13.62□□□□□ -0.23
CLN3-252ENST00000636907 DVL1P1P54792 670 aaPredicted RBP13.62□□□□□ -0.23
CLN3-252ENST00000636907 DSCR9P59020 149 aa13.62□□□□□ -0.23
CLN3-252ENST00000636907 EIF5AP63241 154 aaKnown RBP13.62□□□□□ -0.23
CLN3-252ENST00000636907 PDLIM3Q53GG5 364 aaPredicted RBP13.62□□□□□ -0.23
CLN3-252ENST00000636907 TPTE2P1Q5T6R2 138 aa13.62□□□□□ -0.23
CLN3-252ENST00000636907 UBAC2Q8NBM4 344 aa13.62□□□□□ -0.23
CLN3-252ENST00000636907 RITA1Q96K30 269 aa13.62□□□□□ -0.23
CLN3-252ENST00000636907 OR4C12Q96R67 309 aa13.62□□□□□ -0.23
CLN3-252ENST00000636907 MS4A7Q9GZW8 240 aaPredicted RBP13.62□□□□□ -0.23
CLN3-252ENST00000636907 TMEM14BQ9NUH8 114 aa13.62□□□□□ -0.23
CLN3-252ENST00000636907 DPM3Q9P2X0 92 aa13.62□□□□□ -0.23
CLN3-252ENST00000636907 NUP50Q9UKX7 468 aa13.62□□□□□ -0.23
CLN3-252ENST00000636907 TOX4O94842 621 aa13.61□□□□□ -0.23
CLN3-252ENST00000636907 IGLV2-23P01705 113 aa13.61□□□□□ -0.23
CLN3-252ENST00000636907 METTL15P1P0C7V9 234 aa13.61□□□□□ -0.23
CLN3-252ENST00000636907 MYOD1P15172 320 aa13.61□□□□□ -0.23
CLN3-252ENST00000636907 RAB14P61106 215 aa13.61□□□□□ -0.23
CLN3-252ENST00000636907 LHFPL4Q7Z7J7 247 aa13.61□□□□□ -0.23
CLN3-252ENST00000636907 HAPLN4Q86UW8 402 aa13.61□□□□□ -0.23
CLN3-252ENST00000636907 CIB3Q96Q77 187 aaPredicted RBP13.61□□□□□ -0.23
CLN3-252ENST00000636907 TBX15Q96SF7 602 aa13.61□□□□□ -0.23
CLN3-252ENST00000636907 TCF19Q9Y242 345 aa13.61□□□□□ -0.23
CLN3-252ENST00000636907 BORCS7-ASMTA0A0B4J1R7 106 aa13.6□□□□□ -0.23
CLN3-252ENST00000636907 A0A1W2PPI3 338 aa13.6□□□□□ -0.23
CLN3-252ENST00000636907 NMBP08949 121 aa13.6□□□□□ -0.23
CLN3-252ENST00000636907 ARL16Q0P5N6 197 aa13.6□□□□□ -0.23
CLN3-252ENST00000636907 TMEM14EPQ6UXP3 125 aa13.6□□□□□ -0.23
CLN3-252ENST00000636907 OR1S2Q8NGQ3 325 aa13.6□□□□□ -0.23
CLN3-252ENST00000636907 TMED6Q8WW62 240 aa13.6□□□□□ -0.23
CLN3-252ENST00000636907 ARV1Q9H2C2 271 aa13.6□□□□□ -0.23
CLN3-252ENST00000636907 PRNDQ9UKY0 176 aa13.6□□□□□ -0.23
CLN3-252ENST00000636907 TET2Q6N021 2002 aaPredicted RBP13.6□□□□□ -0.23
CLN3-252ENST00000636907 KBTBD11O94819 623 aa13.59□□□□□ -0.23
CLN3-252ENST00000636907 HSPE1P61604 102 aaKnown RBP13.59□□□□□ -0.23
CLN3-252ENST00000636907 CLEC12BQ2HXU8 276 aa13.59□□□□□ -0.23
CLN3-252ENST00000636907 CACFD1Q9UGQ2 172 aa13.59□□□□□ -0.23
CLN3-252ENST00000636907 STRAPQ9Y3F4 350 aaKnown RBP13.59□□□□□ -0.23
CLN3-252ENST00000636907 HILPDAQ9Y5L2 63 aa13.59□□□□□ -0.23
CLN3-252ENST00000636907 OR51B2Q9Y5P1 312 aa13.59□□□□□ -0.23
CLN3-252ENST00000636907 ASH1LQ9NR48 2969 aaKnown RBP13.59□□□□□ -0.23
CLN3-252ENST00000636907 CEACAM3P40198 252 aa13.59□□□□□ -0.23
CLN3-252ENST00000636907 VDAC2P45880 294 aaPredicted RBP13.59□□□□□ -0.23
CLN3-252ENST00000636907 PSMG3-AS1Q96PY0 264 aa13.59□□□□□ -0.23
CLN3-252ENST00000636907 SLC25A32Q9H2D1 315 aa13.59□□□□□ -0.23
CLN3-252ENST00000636907 TIMM23O14925 209 aa13.58□□□□□ -0.24
CLN3-252ENST00000636907 PAX6P26367 422 aa13.58□□□□□ -0.24
CLN3-252ENST00000636907 LGALS7P47929 136 aa13.58□□□□□ -0.24
CLN3-252ENST00000636907 HOXA1P49639 335 aaPredicted RBP13.58□□□□□ -0.24
CLN3-252ENST00000636907 ZNF266Q14584 549 aa13.58□□□□□ -0.24
CLN3-252ENST00000636907 STPG2Q8N412 459 aa13.58□□□□□ -0.24
CLN3-252ENST00000636907 ATP5SQ99766 215 aa13.58□□□□□ -0.24
CLN3-252ENST00000636907 GINS3Q9BRX5 216 aa13.58□□□□□ -0.24
CLN3-252ENST00000636907 VPS13CQ709C8 3753 aa13.58□□□□□ -0.24
CLN3-252ENST00000636907 ABCA2Q9BZC7 2435 aa13.58□□□□□ -0.24
CLN3-252ENST00000636907 MED13LQ71F56 2210 aa13.58□□□□□ -0.24
CLN3-252ENST00000636907 TEX50A0A1B0GTY4 177 aa13.57□□□□□ -0.24
CLN3-252ENST00000636907 PMS2P5A8MQ11 134 aa13.57□□□□□ -0.24
CLN3-252ENST00000636907 FBXO24O75426 580 aa13.57□□□□□ -0.24
CLN3-252ENST00000636907 SLC25A16P16260 332 aa13.57□□□□□ -0.24
CLN3-252ENST00000636907 USF1P22415 310 aaPredicted RBP13.57□□□□□ -0.24
CLN3-252ENST00000636907 PAX8Q06710 450 aa13.57□□□□□ -0.24
CLN3-252ENST00000636907 VMA21Q3ZAQ7 101 aa13.57□□□□□ -0.24
CLN3-252ENST00000636907 OR8G2PQ6IF36 304 aa13.57□□□□□ -0.24
CLN3-252ENST00000636907 HSD17B11Q8NBQ5 300 aa13.57□□□□□ -0.24
CLN3-252ENST00000636907 OR4A5Q8NH83 315 aa13.57□□□□□ -0.24
CLN3-252ENST00000636907 VSTM2AQ8TAG5 236 aa13.57□□□□□ -0.24
CLN3-252ENST00000636907 TMEM167AQ8TBQ9 72 aa13.57□□□□□ -0.24
CLN3-252ENST00000636907 CLCC1Q96S66 551 aa13.57□□□□□ -0.24
CLN3-252ENST00000636907 HIPK2Q9H2X6 1198 aa13.57□□□□□ -0.24
CLN3-252ENST00000636907 HEYLQ9NQ87 328 aaPredicted RBP13.57□□□□□ -0.24
CLN3-252ENST00000636907 ZNF257Q9Y2Q1 563 aa13.57□□□□□ -0.24
CLN3-252ENST00000636907 LINC00862A6NCI5 91 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 C15orf62A8K5M9 175 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 SLC25A17O43808 307 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 LY86O95711 162 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 OPN1MWP04001 364 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 FGF2P09038 288 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 OPN1MW2P0DN77 364 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 OPN1MW3P0DN78 364 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 CNTFRP26992 372 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 UBE2E1P51965 193 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 RPL8P62917 257 aaKnown RBP13.56□□□□□ -0.24
CLN3-252ENST00000636907 HBG1P69891 147 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 HBG2P69892 147 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms