RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 SLC25A48Q6ZT89 311 aaKnown RBP12.83□□□□□ -0.35
CLN3-251ENST00000636853 LFNGQ8NES3 379 aa12.83□□□□□ -0.35
CLN3-251ENST00000636853 ZNF714Q96N38 554 aa12.83□□□□□ -0.35
CLN3-251ENST00000636853 CIB3Q96Q77 187 aaPredicted RBP12.83□□□□□ -0.35
CLN3-251ENST00000636853 RPRMQ9NS64 109 aa12.83□□□□□ -0.35
CLN3-251ENST00000636853 NCOR2Q9Y618 2525 aa12.83□□□□□ -0.36
CLN3-251ENST00000636853 LYNX1G3V0Z9 82 aa12.83□□□□□ -0.36
CLN3-251ENST00000636853 DVL1O14640 695 aa12.83□□□□□ -0.36
CLN3-251ENST00000636853 LYNX1P0DP58 116 aa12.83□□□□□ -0.36
CLN3-251ENST00000636853 CA5BP1Q8WTZ4 195 aa12.83□□□□□ -0.36
CLN3-251ENST00000636853 ZCCHC14Q8WYQ9 949 aaKnown RBP12.83□□□□□ -0.36
CLN3-251ENST00000636853 TAF15Q92804 592 aaKnown RBP eCLIP12.83□□□□□ -0.36
CLN3-251ENST00000636853 PBDC1Q9BVG4 233 aa12.83□□□□□ -0.36
CLN3-251ENST00000636853 GAL3ST2Q9H3Q3 398 aa12.83□□□□□ -0.36
CLN3-251ENST00000636853 RELBQ01201 579 aa12.82□□□□□ -0.36
CLN3-251ENST00000636853 TLE4Q04727 773 aa12.82□□□□□ -0.36
CLN3-251ENST00000636853 LRRC10Q5BKY1 277 aa12.82□□□□□ -0.36
CLN3-251ENST00000636853 MUC15Q8N387 334 aa12.82□□□□□ -0.36
CLN3-251ENST00000636853 OR10P1Q8NGE3 313 aa12.82□□□□□ -0.36
CLN3-251ENST00000636853 FAM90A9PA6NNJ1 464 aa12.82□□□□□ -0.36
CLN3-251ENST00000636853 DNLZQ5SXM8 178 aa12.82□□□□□ -0.36
CLN3-251ENST00000636853 PSMG3Q9BT73 122 aaPredicted RBP12.82□□□□□ -0.36
CLN3-251ENST00000636853 C15orf62A8K5M9 175 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 CT45A6P0DMU7 189 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 CT45A5P0DMU8 189 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 CT45A7P0DMV0 189 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 PLA2G5P39877 138 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 ELLP55199 621 aaPredicted RBP12.81□□□□□ -0.36
CLN3-251ENST00000636853 RAB2AP61019 212 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 HAGHQ16775 308 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 TMEM30BQ3MIR4 351 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 AARDQ4LEZ3 155 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 SP5Q6BEB4 398 aaPredicted RBP12.81□□□□□ -0.36
CLN3-251ENST00000636853 DPPA3Q6W0C5 159 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 HEPN1Q6WQI6 88 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 ETV3LQ6ZN32 361 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 RHOVQ96L33 236 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 YPEL4Q96NS1 127 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 ABCA4P78363 2273 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 A0A1W2PPH5 198 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 RBFOX3A6NFN3 312 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 SNRNP70P08621 437 aaKnown RBP12.81□□□□□ -0.36
CLN3-251ENST00000636853 DAOP14920 347 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 SPCS3P61009 180 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 ADTRPQ96IZ2 230 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 TMEM147Q9BVK8 224 aa12.81□□□□□ -0.36
CLN3-251ENST00000636853 PARD6GQ9BYG4 376 aaPredicted RBP12.81□□□□□ -0.36
CLN3-251ENST00000636853 ANKHD1Q8IWZ3 2542 aaKnown RBP12.8□□□□□ -0.36
CLN3-251ENST00000636853 OR13C7P0DN81 318 aa12.8□□□□□ -0.36
CLN3-251ENST00000636853 HOXA5P20719 270 aa12.8□□□□□ -0.36
CLN3-251ENST00000636853 LOXP28300 417 aaPredicted RBP12.8□□□□□ -0.36
CLN3-251ENST00000636853 SSTP61278 116 aa12.8□□□□□ -0.36
CLN3-251ENST00000636853 ZNF726P1Q15940 193 aa12.8□□□□□ -0.36
CLN3-251ENST00000636853 ZNF672Q499Z4 452 aaPredicted RBP12.8□□□□□ -0.36
CLN3-251ENST00000636853 AKIRIN2Q53H80 203 aa12.8□□□□□ -0.36
CLN3-251ENST00000636853 OR4A47Q6IF82 309 aa12.8□□□□□ -0.36
CLN3-251ENST00000636853 PINX1Q96BK5 328 aaKnown RBP12.8□□□□□ -0.36
CLN3-251ENST00000636853 BTBD17A6NE02 478 aa12.79□□□□□ -0.36
CLN3-251ENST00000636853 IGKV1-16P04430 117 aa12.79□□□□□ -0.36
CLN3-251ENST00000636853 COL8A2P25067 703 aa12.79□□□□□ -0.36
CLN3-251ENST00000636853 TFF3Q07654 80 aa12.79□□□□□ -0.36
CLN3-251ENST00000636853 ATP6V1FQ16864 119 aa12.79□□□□□ -0.36
CLN3-251ENST00000636853 SSX7Q7RTT5 188 aa12.79□□□□□ -0.36
CLN3-251ENST00000636853 OR10A7Q8NGE5 316 aa12.79□□□□□ -0.36
CLN3-251ENST00000636853 SLC35B3Q9H1N7 401 aa12.79□□□□□ -0.36
CLN3-251ENST00000636853 HEYLQ9NQ87 328 aaPredicted RBP12.79□□□□□ -0.36
CLN3-251ENST00000636853 KIAA1456Q9P272 454 aa12.79□□□□□ -0.36
CLN3-251ENST00000636853 IFNA10P01566 189 aa12.79□□□□□ -0.36
CLN3-251ENST00000636853 FGF7P21781 194 aa12.79□□□□□ -0.36
CLN3-251ENST00000636853 GNB2P62879 340 aa12.79□□□□□ -0.36
CLN3-251ENST00000636853 SERF2P84101 59 aa12.79□□□□□ -0.36
CLN3-251ENST00000636853 LCN15Q6UWW0 184 aa12.79□□□□□ -0.36
CLN3-251ENST00000636853 UNQ6494/PRO21346Q6UXR6 183 aa12.79□□□□□ -0.36
CLN3-251ENST00000636853 OR52E5Q8NH55 327 aa12.79□□□□□ -0.36
CLN3-251ENST00000636853 LRBAP50851 2863 aa12.79□□□□□ -0.36
CLN3-251ENST00000636853 M0R036 132 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 ARG1P05089 322 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 MYOD1P15172 320 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 VDAC2P45880 294 aaPredicted RBP12.78□□□□□ -0.36
CLN3-251ENST00000636853 RCC1LQ96I51 464 aaKnown RBP12.78□□□□□ -0.36
CLN3-251ENST00000636853 GGACTQ9BVM4 153 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 PRORYQ9H606 182 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 SLC35D1Q9NTN3 355 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 KAAG1Q9UBP8 84 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 TCF19Q9Y242 345 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 C15orf61A6NNL5 157 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 RRHO14718 337 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 HBE1P02100 147 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 AKR1C3P42330 323 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 CDX1P47902 265 aaPredicted RBP12.78□□□□□ -0.36
CLN3-251ENST00000636853 REG1BP48304 166 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 FGF8P55075 233 aaPredicted RBP12.78□□□□□ -0.36
CLN3-251ENST00000636853 CD81P60033 236 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 TMEM41BQ5BJD5 291 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 ZNF833PQ6ZTB9 187 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 ABHD12Q8N2K0 398 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 OR13D1Q8NGV5 346 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 MRPL20Q9BYC9 149 aaKnown RBP12.78□□□□□ -0.36
CLN3-251ENST00000636853 HIPK2Q9H2X6 1198 aa12.78□□□□□ -0.36
CLN3-251ENST00000636853 TPRP12270 2363 aaKnown RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms