RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 IFNA10P01566 189 aa10.52□□□□□ -0.73
CLN3-249ENST00000636685 MYOD1P15172 320 aa10.52□□□□□ -0.73
CLN3-249ENST00000636685 RTL8BQ17RB0 113 aa10.52□□□□□ -0.73
CLN3-249ENST00000636685 MOB1BQ7L9L4 216 aa10.52□□□□□ -0.73
CLN3-249ENST00000636685 HDHD3Q9BSH5 251 aaPredicted RBP10.52□□□□□ -0.73
CLN3-249ENST00000636685 SDHAF2Q9NX18 166 aa10.52□□□□□ -0.73
CLN3-249ENST00000636685 RDH8Q9NYR8 311 aa10.52□□□□□ -0.73
CLN3-249ENST00000636685 CKLFQ9UBR5 152 aa10.52□□□□□ -0.73
CLN3-249ENST00000636685 DEFB131BA0A096LNP1 70 aa10.51□□□□□ -0.73
CLN3-249ENST00000636685 IGKV1-6A0A0C4DH72 117 aa10.51□□□□□ -0.73
CLN3-249ENST00000636685 A0A1W2PPK0 400 aa10.51□□□□□ -0.73
CLN3-249ENST00000636685 MFSD2BA6NFX1 497 aa10.51□□□□□ -0.73
CLN3-249ENST00000636685 CRYZL1O95825 349 aa10.51□□□□□ -0.73
CLN3-249ENST00000636685 CTSDP07339 412 aaPredicted RBP10.51□□□□□ -0.73
CLN3-249ENST00000636685 RPA2P15927 270 aa10.51□□□□□ -0.73
CLN3-249ENST00000636685 GPR183P32249 361 aa10.51□□□□□ -0.73
CLN3-249ENST00000636685 MEDAGQ5VYS4 303 aa10.51□□□□□ -0.73
CLN3-249ENST00000636685 OR10K2Q6IF99 312 aa10.51□□□□□ -0.73
CLN3-249ENST00000636685 RPL22L1Q6P5R6 122 aaKnown RBP10.51□□□□□ -0.73
CLN3-249ENST00000636685 ZNF767PQ75MW2 155 aa10.51□□□□□ -0.73
CLN3-249ENST00000636685 NDUFAF3Q9BU61 184 aa10.51□□□□□ -0.73
CLN3-249ENST00000636685 SCN3BQ9NY72 215 aa10.51□□□□□ -0.73
CLN3-249ENST00000636685 TPRKBQ9Y3C4 175 aa10.51□□□□□ -0.73
CLN3-249ENST00000636685 ELOA3CA0A087WX78 387 aaPredicted RBP10.5□□□□□ -0.73
CLN3-249ENST00000636685 TRBV5-5A0A0J9YX44 114 aa10.5□□□□□ -0.73
CLN3-249ENST00000636685 NPIPB5A8MRT5 1133 aa10.5□□□□□ -0.73
CLN3-249ENST00000636685 GSTT2P0CG29 244 aa10.5□□□□□ -0.73
CLN3-249ENST00000636685 GSTT2BP0CG30 244 aa10.5□□□□□ -0.73
CLN3-249ENST00000636685 SAA1P0DJI8 122 aaPredicted RBP10.5□□□□□ -0.73
CLN3-249ENST00000636685 CRHBPP24387 322 aa10.5□□□□□ -0.73
CLN3-249ENST00000636685 PSMB6P28072 239 aa10.5□□□□□ -0.73
CLN3-249ENST00000636685 UBE2DNLQ8IWF7 75 aa10.5□□□□□ -0.73
CLN3-249ENST00000636685 MMD2Q8IY49 270 aa10.5□□□□□ -0.73
CLN3-249ENST00000636685 OR2D2Q9H210 308 aa10.5□□□□□ -0.73
CLN3-249ENST00000636685 AMBNQ9NP70 447 aa10.5□□□□□ -0.73
CLN3-249ENST00000636685 TRBV6-6A0A0A6YYG2 114 aa10.49□□□□□ -0.73
CLN3-249ENST00000636685 E7EUB6 86 aa10.49□□□□□ -0.73
CLN3-249ENST00000636685 IL6RP08887 468 aaPredicted RBP10.49□□□□□ -0.73
CLN3-249ENST00000636685 INAFM2P0DMQ5 153 aa10.49□□□□□ -0.73
CLN3-249ENST00000636685 RRASP10301 218 aa10.49□□□□□ -0.73
CLN3-249ENST00000636685 AREGP15514 252 aa10.49□□□□□ -0.73
CLN3-249ENST00000636685 HTR2CP28335 458 aa10.49□□□□□ -0.73
CLN3-249ENST00000636685 TFPI2P48307 235 aa10.49□□□□□ -0.73
CLN3-249ENST00000636685 CDK10Q15131 360 aa10.49□□□□□ -0.73
CLN3-249ENST00000636685 CENPSQ8N2Z9 138 aa10.49□□□□□ -0.73
CLN3-249ENST00000636685 OR52I1Q8NGK6 324 aa10.49□□□□□ -0.73
CLN3-249ENST00000636685 TMEM190Q8WZ59 177 aa10.49□□□□□ -0.73
CLN3-249ENST00000636685 FYTTD1Q96QD9 318 aaKnown RBP10.49□□□□□ -0.73
CLN3-249ENST00000636685 NICN1Q9BSH3 213 aa10.49□□□□□ -0.73
CLN3-249ENST00000636685 ZNF436Q9C0F3 470 aaPredicted RBP10.49□□□□□ -0.73
CLN3-249ENST00000636685 TRBV7-1A0A0A6YYK4 115 aa10.48□□□□□ -0.73
CLN3-249ENST00000636685 A0A1B0GW64 132 aa10.48□□□□□ -0.73
CLN3-249ENST00000636685 SNTNA6NMZ2 147 aa10.48□□□□□ -0.73
CLN3-249ENST00000636685 NOL3O60936 208 aaKnown RBP10.48□□□□□ -0.73
CLN3-249ENST00000636685 CD74P04233 296 aa10.48□□□□□ -0.73
CLN3-249ENST00000636685 LIMS3P0CW19 117 aa10.48□□□□□ -0.73
CLN3-249ENST00000636685 LIMS4P0CW20 117 aa10.48□□□□□ -0.73
CLN3-249ENST00000636685 C12orf74Q32Q52 190 aa10.48□□□□□ -0.73
CLN3-249ENST00000636685 CCDC58Q4VC31 144 aa10.48□□□□□ -0.73
CLN3-249ENST00000636685 PLET1Q6UQ28 207 aa10.48□□□□□ -0.73
CLN3-249ENST00000636685 CLVS1Q8IUQ0 354 aaPredicted RBP10.48□□□□□ -0.73
CLN3-249ENST00000636685 CDH26Q8IXH8 852 aa10.48□□□□□ -0.73
CLN3-249ENST00000636685 AK3Q9UIJ7 227 aa10.48□□□□□ -0.73
CLN3-249ENST00000636685 CELA1Q9UNI1 258 aa10.48□□□□□ -0.73
CLN3-249ENST00000636685 FLG2Q5D862 2391 aaPredicted RBP10.47□□□□□ -0.73
CLN3-249ENST00000636685 IGHV3OR16-8A0A075B7F1 116 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 TRBV5-7A0A0A0MS05 114 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 ZNF207O43670 478 aaKnown RBP10.47□□□□□ -0.73
CLN3-249ENST00000636685 CREBL2O60519 120 aaPredicted RBP10.47□□□□□ -0.73
CLN3-249ENST00000636685 IFNA21P01568 189 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 IFNA17P01571 189 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 REG1AP05451 166 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 CRYGCP07315 174 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 CD3GP09693 182 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 DCKP27707 260 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 TMBIM6P55061 237 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 RPS11P62280 158 aaKnown RBP eCLIP10.47□□□□□ -0.73
CLN3-249ENST00000636685 RPS27AP62979 156 aaKnown RBP10.47□□□□□ -0.73
CLN3-249ENST00000636685 Q499Y3 187 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 OR2G6Q5TZ20 316 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 SSX9Q7RTT3 188 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 SPARTQ8N0X7 666 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 OSR1Q8TAX0 266 aaPredicted RBP10.47□□□□□ -0.73
CLN3-249ENST00000636685 ZNF502Q8TBZ5 544 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 SMIM19Q96E16 107 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 KCNK15Q9H427 330 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 Q9N2K0 584 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 DAZ1Q9NQZ3 744 aaKnown RBP10.47□□□□□ -0.73
CLN3-249ENST00000636685 SLC2A9Q9NRM0 540 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 PLEKHJ1Q9NW61 149 aa10.47□□□□□ -0.73
CLN3-249ENST00000636685 SRRM2Q9UQ35 2752 aaKnown RBP10.47□□□□□ -0.73
CLN3-249ENST00000636685 IGKV3-7A0A075B6H7 116 aa10.46□□□□□ -0.73
CLN3-249ENST00000636685 IGLV11-55A0A075B6I3 123 aa10.46□□□□□ -0.73
CLN3-249ENST00000636685 C15orf61A6NNL5 157 aa10.46□□□□□ -0.73
CLN3-249ENST00000636685 LINC00473A8K010 186 aa10.46□□□□□ -0.73
CLN3-249ENST00000636685 EPM2AB3EWF7 344 aa10.46□□□□□ -0.73
CLN3-249ENST00000636685 OGG1O15527 345 aa10.46□□□□□ -0.73
CLN3-249ENST00000636685 MIFP14174 115 aa10.46□□□□□ -0.73
CLN3-249ENST00000636685 RPL27AP46776 148 aaKnown RBP10.46□□□□□ -0.73
CLN3-249ENST00000636685 TPBGQ13641 420 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms