RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 HES7Q9BYE0 225 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 TIMM9Q9Y5J7 89 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 IGHV1-45A0A0A0MS14 117 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 C12orf77C9JDV5 145 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 ENSAO43768 121 aaKnown RBP9.3□□□□□ -0.92
CLN3-244ENST00000636147 NUPR1O60356 82 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 COX7A2P2O60397 106 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 NEURL1O76050 574 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 IGHV3-48P01763 117 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 TRA2AQ13595 282 aaKnown RBP eCLIP9.3□□□□□ -0.92
CLN3-244ENST00000636147 OR4A47Q6IF82 309 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 OR2Z1Q8NG97 314 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 NEU1Q99519 415 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 COMMD5Q9GZQ3 224 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 IL36BQ9NZH7 164 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 IL19Q9UHD0 177 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 DNPH1O43598 174 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 PLAUP00749 431 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 GATA2P23769 480 aaPredicted RBP9.3□□□□□ -0.92
CLN3-244ENST00000636147 GCHFRP30047 84 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 FAM53AQ6NSI3 398 aaPredicted RBP9.3□□□□□ -0.92
CLN3-244ENST00000636147 HAPLN4Q86UW8 402 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 OR2T6Q8NHC8 308 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 LRRC29Q8WV35 223 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 C1QTNF5Q9BXJ0 243 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 LNP1A1A4G5 178 aa9.29□□□□□ -0.92
CLN3-244ENST00000636147 CLDN14O95500 239 aa9.29□□□□□ -0.92
CLN3-244ENST00000636147 CA1P00915 261 aaPredicted RBP9.29□□□□□ -0.92
CLN3-244ENST00000636147 FOXA3P55318 350 aaPredicted RBP9.29□□□□□ -0.92
CLN3-244ENST00000636147 OR1C1Q15619 314 aa9.29□□□□□ -0.92
CLN3-244ENST00000636147 OR5P3Q8WZ94 311 aa9.29□□□□□ -0.92
CLN3-244ENST00000636147 CELA3AP09093 270 aa9.29□□□□□ -0.92
CLN3-244ENST00000636147 IL11RAQ14626 422 aa9.29□□□□□ -0.92
CLN3-244ENST00000636147 ZNF114Q8NC26 417 aa9.29□□□□□ -0.92
CLN3-244ENST00000636147 SSC4DQ8WTU2 575 aa9.29□□□□□ -0.92
CLN3-244ENST00000636147 MS4A5Q9H3V2 200 aa9.29□□□□□ -0.92
CLN3-244ENST00000636147 ELOVL5Q9NYP7 299 aa9.29□□□□□ -0.92
CLN3-244ENST00000636147 RIF1Q5UIP0 2472 aaKnown RBP9.29□□□□□ -0.92
CLN3-244ENST00000636147 AGFG2O95081 481 aa9.29□□□□□ -0.92
CLN3-244ENST00000636147 RPL30P62888 115 aaKnown RBP9.29□□□□□ -0.92
CLN3-244ENST00000636147 DCAF10Q5QP82 559 aa9.29□□□□□ -0.92
CLN3-244ENST00000636147 SMIM15Q7Z3B0 74 aa9.29□□□□□ -0.92
CLN3-244ENST00000636147 SSUH2Q9Y2M2 353 aa9.29□□□□□ -0.92
CLN3-244ENST00000636147 IGKV1-39P01597 117 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 IGKV1D-39P04432 117 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 GPR6P46095 362 aaPredicted RBP9.28□□□□□ -0.92
CLN3-244ENST00000636147 TMEM42Q69YG0 159 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 PCSK4Q6UW60 755 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 C6orf15Q6UXA7 325 aaPredicted RBP9.28□□□□□ -0.92
CLN3-244ENST00000636147 Q6ZVH6 145 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 SAXO1Q8IYX7 474 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 ARL6IP6Q8N6S5 226 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 GNB4Q9HAV0 340 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 TMEM167BQ9NRX6 74 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 SIT1Q9Y3P8 196 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 SPTAN1Q13813 2472 aaKnown RBP9.28□□□□□ -0.92
CLN3-244ENST00000636147 CD46P15529 392 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 TIMP3P35625 211 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 RELBQ01201 579 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 GABRA6Q16445 453 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 KRTCAP3Q53RY4 240 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 ZBTB34Q8NCN2 500 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 FAM173AQ9BQD7 235 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 CRIM1Q9NZV1 1036 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 IGHV3OR15-7A0A075B7D8 119 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 SLC25A5P05141 298 aaKnown RBP9.28□□□□□ -0.92
CLN3-244ENST00000636147 COX6A1P12074 109 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 ZNF585BQ52M93 769 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 Q6ZWC4 215 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 SSX8Q7RTT4 187 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 LINC00596Q86U02 117 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 STPG3Q8N7X2 389 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 POM121L2Q96KW2 1035 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 OR8B2Q96RD0 313 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 ZNF355PQ9NSJ1 428 aa9.28□□□□□ -0.92
CLN3-244ENST00000636147 IGLV3-32A0A0A0MS00 114 aa9.27□□□□□ -0.92
CLN3-244ENST00000636147 ZNF716A6NP11 495 aa9.27□□□□□ -0.92
CLN3-244ENST00000636147 SNAI2O43623 268 aa9.27□□□□□ -0.92
CLN3-244ENST00000636147 MT-ND6P03923 174 aa9.27□□□□□ -0.92
CLN3-244ENST00000636147 ORM2P19652 201 aa9.27□□□□□ -0.92
CLN3-244ENST00000636147 LMO1P25800 156 aa9.27□□□□□ -0.92
CLN3-244ENST00000636147 NTF4P34130 210 aa9.27□□□□□ -0.92
CLN3-244ENST00000636147 SPEM1Q8N4L4 309 aa9.27□□□□□ -0.92
CLN3-244ENST00000636147 SMRP1Q8NCR6 262 aa9.27□□□□□ -0.92
CLN3-244ENST00000636147 SPSB4Q96A44 273 aa9.27□□□□□ -0.92
CLN3-244ENST00000636147 GMPPAQ96IJ6 420 aaPredicted RBP9.27□□□□□ -0.92
CLN3-244ENST00000636147 ALKBH7Q9BT30 221 aaPredicted RBP9.27□□□□□ -0.92
CLN3-244ENST00000636147 PHF7Q9BWX1 381 aaPredicted RBP9.27□□□□□ -0.92
CLN3-244ENST00000636147 IGLV3-12A0A075B6K2 115 aa9.27□□□□□ -0.93
CLN3-244ENST00000636147 KLRC4-KLRK1H3BQV0 150 aa9.27□□□□□ -0.93
CLN3-244ENST00000636147 BMPR1BO00238 502 aa9.27□□□□□ -0.93
CLN3-244ENST00000636147 RBFOX2O43251 390 aaKnown RBP eCLIP9.27□□□□□ -0.93
CLN3-244ENST00000636147 TMEM14EPQ6UXP3 125 aa9.27□□□□□ -0.93
CLN3-244ENST00000636147 YPEL4Q96NS1 127 aa9.27□□□□□ -0.93
CLN3-244ENST00000636147 TCFL5Q9UL49 500 aa9.27□□□□□ -0.93
CLN3-244ENST00000636147 LOXL2Q9Y4K0 774 aa9.27□□□□□ -0.93
CLN3-244ENST00000636147 SERTM2A0A1B0GWG4 89 aa9.27□□□□□ -0.93
CLN3-244ENST00000636147 A0A1B0GWJ7 208 aa9.27□□□□□ -0.93
CLN3-244ENST00000636147 PATE3B3GLJ2 98 aa9.27□□□□□ -0.93
CLN3-244ENST00000636147 SPRY3O43610 288 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms