RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 COMMD1Q8N668 190 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 DEDD2Q8WXF8 326 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 S100ZQ8WXG8 99 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 SCGB3A2Q96PL1 93 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 OR2A7Q96R45 310 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 PHB2Q99623 299 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 FAM103A1Q9BTL3 118 aaKnown RBP14.21□□□□□ -0.13
CLN3-239ENST00000628023 ZNF430Q9H8G1 570 aaPredicted RBP14.21□□□□□ -0.13
CLN3-239ENST00000628023 ZNF580Q9UK33 172 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 TET2Q6N021 2002 aaPredicted RBP14.2□□□□□ -0.14
CLN3-239ENST00000628023 PLXNB1O43157 2135 aa14.2□□□□□ -0.14
CLN3-239ENST00000628023 LINC00854A0A1B0GVQ3 168 aa14.2□□□□□ -0.14
CLN3-239ENST00000628023 TSPAN15O95858 294 aa14.2□□□□□ -0.14
CLN3-239ENST00000628023 NSUN5P1Q3KNT7 163 aa14.2□□□□□ -0.14
CLN3-239ENST00000628023 CXorf66Q5JRM2 361 aaPredicted RBP14.2□□□□□ -0.14
CLN3-239ENST00000628023 MMD2Q8IY49 270 aa14.2□□□□□ -0.14
CLN3-239ENST00000628023 MRGPRFQ96AM1 343 aa14.2□□□□□ -0.14
CLN3-239ENST00000628023 R3HDM4Q96D70 268 aa14.2□□□□□ -0.14
CLN3-239ENST00000628023 AKIP1Q9NQ31 210 aa14.2□□□□□ -0.14
CLN3-239ENST00000628023 FBXO7Q9Y3I1 522 aa14.2□□□□□ -0.14
CLN3-239ENST00000628023 A0A1W2PRX2 142 aa14.19□□□□□ -0.14
CLN3-239ENST00000628023 ARPC1BO15143 372 aaKnown RBP14.19□□□□□ -0.14
CLN3-239ENST00000628023 SERPINE2P07093 398 aa14.19□□□□□ -0.14
CLN3-239ENST00000628023 IL7P13232 177 aa14.19□□□□□ -0.14
CLN3-239ENST00000628023 RPA2P15927 270 aa14.19□□□□□ -0.14
CLN3-239ENST00000628023 OR4A47Q6IF82 309 aa14.19□□□□□ -0.14
CLN3-239ENST00000628023 UNQ5815/PRO19632Q6UWF5 114 aa14.19□□□□□ -0.14
CLN3-239ENST00000628023 NDUFA11Q86Y39 141 aa14.19□□□□□ -0.14
CLN3-239ENST00000628023 PUSL1Q8N0Z8 303 aaKnown RBP14.19□□□□□ -0.14
CLN3-239ENST00000628023 SDHCQ99643 169 aaPredicted RBP14.19□□□□□ -0.14
CLN3-239ENST00000628023 FAM212BQ9NTI7 297 aaPredicted RBP14.19□□□□□ -0.14
CLN3-239ENST00000628023 TMEM140Q9NV12 185 aa14.19□□□□□ -0.14
CLN3-239ENST00000628023 TSSC4Q9Y5U2 329 aaPredicted RBP14.19□□□□□ -0.14
CLN3-239ENST00000628023 TEX13DA0A0J9YY54 714 aaPredicted RBP14.18□□□□□ -0.14
CLN3-239ENST00000628023 A0A1W2PN81 502 aa14.18□□□□□ -0.14
CLN3-239ENST00000628023 MARCH11A6NNE9 402 aa14.18□□□□□ -0.14
CLN3-239ENST00000628023 CENPXA8MT69 81 aa14.18□□□□□ -0.14
CLN3-239ENST00000628023 H0Y980 276 aa14.18□□□□□ -0.14
CLN3-239ENST00000628023 KRASP01116 189 aa14.18□□□□□ -0.14
CLN3-239ENST00000628023 CHRNA7P36544 502 aa14.18□□□□□ -0.14
CLN3-239ENST00000628023 CD83Q01151 205 aa14.18□□□□□ -0.14
CLN3-239ENST00000628023 LFNGQ8NES3 379 aa14.18□□□□□ -0.14
CLN3-239ENST00000628023 OR4A5Q8NH83 315 aa14.18□□□□□ -0.14
CLN3-239ENST00000628023 TMEM167AQ8TBQ9 72 aa14.18□□□□□ -0.14
CLN3-239ENST00000628023 C5orf66Q9H5L9 145 aa14.18□□□□□ -0.14
CLN3-239ENST00000628023 BET1LQ9NYM9 111 aa14.18□□□□□ -0.14
CLN3-239ENST00000628023 FOXA2Q9Y261 457 aaPredicted RBP14.18□□□□□ -0.14
CLN3-239ENST00000628023 C3orf85A0A1B0GTC6 90 aa14.17□□□□□ -0.14
CLN3-239ENST00000628023 NAP1L6A6NFF2 107 aa14.17□□□□□ -0.14
CLN3-239ENST00000628023 ELANEP08246 267 aa14.17□□□□□ -0.14
CLN3-239ENST00000628023 G6PCP35575 357 aa14.17□□□□□ -0.14
CLN3-239ENST00000628023 CRIP2P52943 208 aaPredicted RBP14.17□□□□□ -0.14
CLN3-239ENST00000628023 RPL8P62917 257 aaKnown RBP14.17□□□□□ -0.14
CLN3-239ENST00000628023 SSBP2P81877 361 aaPredicted RBP14.17□□□□□ -0.14
CLN3-239ENST00000628023 CFHR3Q02985 330 aa14.17□□□□□ -0.14
CLN3-239ENST00000628023 FOXE3Q13461 319 aa14.17□□□□□ -0.14
CLN3-239ENST00000628023 POU2AF1Q16633 256 aa14.17□□□□□ -0.14
CLN3-239ENST00000628023 TRIM16LQ309B1 348 aa14.17□□□□□ -0.14
CLN3-239ENST00000628023 ZNF585BQ52M93 769 aa14.17□□□□□ -0.14
CLN3-239ENST00000628023 TCTEX1D4Q5JR98 221 aa14.17□□□□□ -0.14
CLN3-239ENST00000628023 TMEM65Q6PI78 240 aa14.17□□□□□ -0.14
CLN3-239ENST00000628023 SRSF12Q8WXF0 261 aaKnown RBP14.17□□□□□ -0.14
CLN3-239ENST00000628023 RTBDNQ9BSG5 229 aaPredicted RBP14.17□□□□□ -0.14
CLN3-239ENST00000628023 GPR132Q9UNW8 380 aa14.17□□□□□ -0.14
CLN3-239ENST00000628023 VSIG4Q9Y279 399 aa14.17□□□□□ -0.14
CLN3-239ENST00000628023 IGHG4P01861 327 aa14.16□□□□□ -0.14
CLN3-239ENST00000628023 APELAP0DMC3 54 aa14.16□□□□□ -0.14
CLN3-239ENST00000628023 PF4V1P10720 104 aa14.16□□□□□ -0.14
CLN3-239ENST00000628023 EGR2P11161 476 aaPredicted RBP14.16□□□□□ -0.14
CLN3-239ENST00000628023 CD40LGP29965 261 aa14.16□□□□□ -0.14
CLN3-239ENST00000628023 MAS1LP35410 378 aa14.16□□□□□ -0.14
CLN3-239ENST00000628023 MRGPRG-AS1Q2M3A8 158 aa14.16□□□□□ -0.14
CLN3-239ENST00000628023 AKIRIN2Q53H80 203 aa14.16□□□□□ -0.14
CLN3-239ENST00000628023 C10orf55Q5SWW7 151 aa14.16□□□□□ -0.14
CLN3-239ENST00000628023 TMED4Q7Z7H5 227 aa14.16□□□□□ -0.14
CLN3-239ENST00000628023 C1QL4Q86Z23 238 aa14.16□□□□□ -0.14
CLN3-239ENST00000628023 TP53RKQ96S44 253 aa14.16□□□□□ -0.14
CLN3-239ENST00000628023 CCDC32Q9BV29 185 aa14.16□□□□□ -0.14
CLN3-239ENST00000628023 WDR12Q9GZL7 423 aaKnown RBP14.16□□□□□ -0.14
CLN3-239ENST00000628023 NAA60Q9H7X0 242 aa14.16□□□□□ -0.14
CLN3-239ENST00000628023 NUBP2Q9Y5Y2 271 aa14.16□□□□□ -0.14
CLN3-239ENST00000628023 MSGN1A6NI15 193 aa14.15□□□□□ -0.14
CLN3-239ENST00000628023 NUDT19A8MXV4 375 aa14.15□□□□□ -0.14
CLN3-239ENST00000628023 B3GALNT1O75752 331 aa14.15□□□□□ -0.14
CLN3-239ENST00000628023 HLA-GP17693 338 aa14.15□□□□□ -0.14
CLN3-239ENST00000628023 RPL27AP46776 148 aaKnown RBP14.15□□□□□ -0.14
CLN3-239ENST00000628023 SP6Q3SY56 376 aa14.15□□□□□ -0.14
CLN3-239ENST00000628023 LCNL1Q6ZST4 164 aa14.15□□□□□ -0.14
CLN3-239ENST00000628023 SGPP2Q8IWX5 399 aa14.15□□□□□ -0.14
CLN3-239ENST00000628023 OR5M8Q8NGP6 311 aa14.15□□□□□ -0.14
CLN3-239ENST00000628023 RNASE11Q8TAA1 199 aaKnown RBP14.15□□□□□ -0.14
CLN3-239ENST00000628023 FYTTD1Q96QD9 318 aaKnown RBP14.15□□□□□ -0.14
CLN3-239ENST00000628023 SPIN2AQ99865 258 aa14.15□□□□□ -0.14
CLN3-239ENST00000628023 SPIN2BQ9BPZ2 258 aa14.15□□□□□ -0.14
CLN3-239ENST00000628023 C7orf50Q9BRJ6 194 aaKnown RBP14.15□□□□□ -0.14
CLN3-239ENST00000628023 CMYA5Q8N3K9 4069 aa14.15□□□□□ -0.14
CLN3-239ENST00000628023 TNCP24821 2201 aa14.14□□□□□ -0.15
CLN3-239ENST00000628023 CRYM-AS1A6NIL9 109 aa14.14□□□□□ -0.15
CLN3-239ENST00000628023 UPK2O00526 184 aa14.14□□□□□ -0.15
CLN3-239ENST00000628023 SNAPC5O75971 98 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms