RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 PLAUP00749 431 aa17.52■□□□□ 0.4
LIME1-210ENST00000621325 ZNF25P17030 456 aaPredicted RBP17.52■□□□□ 0.4
LIME1-210ENST00000621325 HBG1P69891 147 aa17.52■□□□□ 0.4
LIME1-210ENST00000621325 HBG2P69892 147 aa17.52■□□□□ 0.4
LIME1-210ENST00000621325 KIAA0141Q14154 515 aaPredicted RBP17.52■□□□□ 0.4
LIME1-210ENST00000621325 AKR1C8PQ5T2L2 129 aa17.52■□□□□ 0.4
LIME1-210ENST00000621325 ZNRD1Q9P1U0 126 aa17.52■□□□□ 0.4
LIME1-210ENST00000621325 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.51■□□□□ 0.39
LIME1-210ENST00000621325 TMEM178BH3BS89 294 aa17.51■□□□□ 0.39
LIME1-210ENST00000621325 HPRT1P00492 218 aa17.51■□□□□ 0.39
LIME1-210ENST00000621325 SLC38A11Q08AI6 406 aa17.51■□□□□ 0.39
LIME1-210ENST00000621325 KLRB1Q12918 225 aa17.51■□□□□ 0.39
LIME1-210ENST00000621325 ARFGEF3Q5TH69 2177 aa17.51■□□□□ 0.39
LIME1-210ENST00000621325 ARG1P05089 322 aa17.51■□□□□ 0.39
LIME1-210ENST00000621325 PAX1P15863 534 aa17.51■□□□□ 0.39
LIME1-210ENST00000621325 HNF4GQ14541 408 aa17.51■□□□□ 0.39
LIME1-210ENST00000621325 CDSNQ15517 529 aa17.51■□□□□ 0.39
LIME1-210ENST00000621325 LYG1Q8N1E2 194 aa17.51■□□□□ 0.39
LIME1-210ENST00000621325 ZNF439Q8NDP4 499 aa17.51■□□□□ 0.39
LIME1-210ENST00000621325 SCGB1C1Q8TD33 95 aa17.51■□□□□ 0.39
LIME1-210ENST00000621325 DDB2Q92466 427 aa17.51■□□□□ 0.39
LIME1-210ENST00000621325 RARRES2Q99969 163 aa17.51■□□□□ 0.39
LIME1-210ENST00000621325 VSIRQ9H7M9 311 aa17.51■□□□□ 0.39
LIME1-210ENST00000621325 IDI2-AS1Q9NZ38 188 aa17.51■□□□□ 0.39
LIME1-210ENST00000621325 SLC25A10Q9UBX3 287 aaPredicted RBP17.51■□□□□ 0.39
LIME1-210ENST00000621325 TRAV38-1A0A0B4J264 116 aa17.5■□□□□ 0.39
LIME1-210ENST00000621325 CCL21O00585 134 aa17.5■□□□□ 0.39
LIME1-210ENST00000621325 PDZD11Q5EBL8 140 aa17.5■□□□□ 0.39
LIME1-210ENST00000621325 S1PR3Q99500 378 aa17.5■□□□□ 0.39
LIME1-210ENST00000621325 C20orf24Q9BUV8 137 aa17.5■□□□□ 0.39
LIME1-210ENST00000621325 DYNLRB1Q9NP97 96 aa17.5■□□□□ 0.39
LIME1-210ENST00000621325 NKX6-3A6NJ46 265 aa17.5■□□□□ 0.39
LIME1-210ENST00000621325 RAB7AP51149 207 aa17.5■□□□□ 0.39
LIME1-210ENST00000621325 LRRC75BQ2VPJ9 315 aa17.5■□□□□ 0.39
LIME1-210ENST00000621325 FAM216AQ8WUB2 273 aa17.5■□□□□ 0.39
LIME1-210ENST00000621325 TMEM106BQ9NUM4 274 aa17.5■□□□□ 0.39
LIME1-210ENST00000621325 PPIAL4EA0A075B759 164 aa17.49■□□□□ 0.39
LIME1-210ENST00000621325 TRAV3A0A0B4J244 114 aa17.49■□□□□ 0.39
LIME1-210ENST00000621325 UBE2L5PA0A1B0GUS4 154 aa17.49■□□□□ 0.39
LIME1-210ENST00000621325 C7orf77A4D0Y5 90 aa17.49■□□□□ 0.39
LIME1-210ENST00000621325 CEBPZOSA8MTT3 80 aa17.49■□□□□ 0.39
LIME1-210ENST00000621325 VSTM5A8MXK1 200 aa17.49■□□□□ 0.39
LIME1-210ENST00000621325 PPIAL4DF5H284 164 aa17.49■□□□□ 0.39
LIME1-210ENST00000621325 PPIAL4FP0DN26 164 aa17.49■□□□□ 0.39
LIME1-210ENST00000621325 AWAT1Q58HT5 328 aa17.49■□□□□ 0.39
LIME1-210ENST00000621325 LYPD2Q6UXB3 125 aa17.49■□□□□ 0.39
LIME1-210ENST00000621325 CORO2AQ92828 525 aa17.49■□□□□ 0.39
LIME1-210ENST00000621325 PPIAL4AQ9Y536 164 aa17.49■□□□□ 0.39
LIME1-210ENST00000621325 COL6A6A6NMZ7 2263 aa17.49■□□□□ 0.39
LIME1-210ENST00000621325 ITGB1BP1O14713 200 aa17.49■□□□□ 0.39
LIME1-210ENST00000621325 PLA2G5P39877 138 aa17.49■□□□□ 0.39
LIME1-210ENST00000621325 WDR61Q9GZS3 305 aaKnown RBP17.49■□□□□ 0.39
LIME1-210ENST00000621325 LINC00574Q9H8X3 128 aa17.49■□□□□ 0.39
LIME1-210ENST00000621325 PMS2P5A8MQ11 134 aa17.48■□□□□ 0.39
LIME1-210ENST00000621325 MRPS11P82912 194 aaKnown RBP17.48■□□□□ 0.39
LIME1-210ENST00000621325 GFI1BQ5VTD9 330 aa17.48■□□□□ 0.39
LIME1-210ENST00000621325 SP5Q6BEB4 398 aaPredicted RBP17.48■□□□□ 0.39
LIME1-210ENST00000621325 RAB9BQ9NP90 201 aa17.48■□□□□ 0.39
LIME1-210ENST00000621325 RPRMQ9NS64 109 aa17.48■□□□□ 0.39
LIME1-210ENST00000621325 ANKHD1Q8IWZ3 2542 aaKnown RBP17.48■□□□□ 0.39
LIME1-210ENST00000621325 hADV38S2A0JD32 116 aa17.48■□□□□ 0.39
LIME1-210ENST00000621325 CCL3L1P16619 93 aa17.48■□□□□ 0.39
LIME1-210ENST00000621325 MALSU1Q96EH3 234 aa17.48■□□□□ 0.39
LIME1-210ENST00000621325 DOK5Q9P104 306 aa17.48■□□□□ 0.39
LIME1-210ENST00000621325 RPUSD1Q9UJJ7 312 aaKnown RBP17.48■□□□□ 0.39
LIME1-210ENST00000621325 GAB2Q9UQC2 676 aa17.48■□□□□ 0.39
LIME1-210ENST00000621325 TPRP12270 2363 aaKnown RBP17.47■□□□□ 0.39
LIME1-210ENST00000621325 RBFOX2O43251 390 aaKnown RBP eCLIP17.47■□□□□ 0.39
LIME1-210ENST00000621325 SIAH2O43255 324 aa17.47■□□□□ 0.39
LIME1-210ENST00000621325 CD3EP07766 207 aa17.47■□□□□ 0.39
LIME1-210ENST00000621325 NPSP0C0P6 89 aa17.47■□□□□ 0.39
LIME1-210ENST00000621325 RPL31P62899 125 aaKnown RBP17.47■□□□□ 0.39
LIME1-210ENST00000621325 C1orf87Q8N0U7 546 aa17.47■□□□□ 0.39
LIME1-210ENST00000621325 ST6GALNAC3Q8NDV1 305 aa17.47■□□□□ 0.39
LIME1-210ENST00000621325 LFNGQ8NES3 379 aa17.47■□□□□ 0.39
LIME1-210ENST00000621325 ABCA4P78363 2273 aa17.47■□□□□ 0.39
LIME1-210ENST00000621325 IFNA17P01571 189 aa17.47■□□□□ 0.39
LIME1-210ENST00000621325 GPR61Q9BZJ8 451 aa17.47■□□□□ 0.39
LIME1-210ENST00000621325 GOLT1BQ9Y3E0 138 aa17.47■□□□□ 0.39
LIME1-210ENST00000621325 LINC00312Q9Y6C7 94 aa17.47■□□□□ 0.39
LIME1-210ENST00000621325 A8MWP6 167 aa17.46■□□□□ 0.39
LIME1-210ENST00000621325 C1QTNF9P0C862 333 aa17.46■□□□□ 0.39
LIME1-210ENST00000621325 TAF15Q92804 592 aaKnown RBP eCLIP17.46■□□□□ 0.39
LIME1-210ENST00000621325 PBDC1Q9BVG4 233 aa17.46■□□□□ 0.39
LIME1-210ENST00000621325 TMEM140Q9NV12 185 aa17.46■□□□□ 0.39
LIME1-210ENST00000621325 APOBEC3AP31941 199 aaPredicted RBP17.46■□□□□ 0.38
LIME1-210ENST00000621325 ZCCHC14Q8WYQ9 949 aaKnown RBP17.46■□□□□ 0.38
LIME1-210ENST00000621325 CTSZQ9UBR2 303 aa17.46■□□□□ 0.38
LIME1-210ENST00000621325 A0A1W2PPE2 198 aa17.45■□□□□ 0.38
LIME1-210ENST00000621325 TNFRSF13BO14836 293 aaPredicted RBP17.45■□□□□ 0.38
LIME1-210ENST00000621325 CHRNB4P30926 498 aa17.45■□□□□ 0.38
LIME1-210ENST00000621325 ERVK-16P61578 105 aa17.45■□□□□ 0.38
LIME1-210ENST00000621325 ADORA2A-AS1P86434 159 aa17.45■□□□□ 0.38
LIME1-210ENST00000621325 RELBQ01201 579 aa17.45■□□□□ 0.38
LIME1-210ENST00000621325 HAGHQ16775 308 aa17.45■□□□□ 0.38
LIME1-210ENST00000621325 TMEM200BQ69YZ2 307 aa17.45■□□□□ 0.38
LIME1-210ENST00000621325 SSX7Q7RTT5 188 aa17.45■□□□□ 0.38
LIME1-210ENST00000621325 OR4A16Q8NH70 328 aa17.45■□□□□ 0.38
LIME1-210ENST00000621325 TUBA4BQ9H853 241 aa17.45■□□□□ 0.38
LIME1-210ENST00000621325 KPTNQ9Y664 436 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms