RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 CHODLQ9H9P2 273 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 GAPDHP04406 335 aaKnown RBP12.93□□□□□ -0.34
CPSF1-213ENST00000620219 COL8A1P27658 744 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 HTR1DP28221 377 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 SRSF3P84103 164 aaKnown RBP12.93□□□□□ -0.34
CPSF1-213ENST00000620219 OR4A47Q6IF82 309 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 HCP5Q6MZN7 132 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 TCF19Q9Y242 345 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 IGKV1-39P01597 117 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 IGKV1D-39P04432 117 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 MYOD1P15172 320 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 BPESC1Q9GZL8 116 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 SLC25A22Q9H936 323 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 PUS1Q9Y606 427 aaKnown RBP eCLIP12.93□□□□□ -0.34
CPSF1-213ENST00000620219 TRAV3A0A0B4J244 114 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 CD55P08174 381 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 OR9G9P0C7N8 305 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 PJVKQ0ZLH3 352 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 UTF1Q5T230 341 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 OR4C12Q96R67 309 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 TMEM133Q9H2Q1 129 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 IFI27L2Q9H2X8 130 aa12.93□□□□□ -0.34
CPSF1-213ENST00000620219 SNRNP70P08621 437 aaKnown RBP12.92□□□□□ -0.34
CPSF1-213ENST00000620219 EFNB3Q15768 340 aa12.92□□□□□ -0.34
CPSF1-213ENST00000620219 SLC35E1Q96K37 410 aa12.92□□□□□ -0.34
CPSF1-213ENST00000620219 WASHC3Q9Y3C0 194 aa12.92□□□□□ -0.34
CPSF1-213ENST00000620219 SLC25A6P12236 298 aa12.92□□□□□ -0.34
CPSF1-213ENST00000620219 NPY1RP25929 384 aa12.92□□□□□ -0.34
CPSF1-213ENST00000620219 FFAR4Q5NUL3 377 aa12.92□□□□□ -0.34
CPSF1-213ENST00000620219 FAM168AQ92567 244 aa12.92□□□□□ -0.34
CPSF1-213ENST00000620219 WSB1Q9Y6I7 421 aa12.92□□□□□ -0.34
CPSF1-213ENST00000620219 TRBV23-1A0A0A0MS06 115 aa12.92□□□□□ -0.34
CPSF1-213ENST00000620219 ZP3P21754 424 aa12.92□□□□□ -0.34
CPSF1-213ENST00000620219 PDLIM4P50479 330 aa12.92□□□□□ -0.34
CPSF1-213ENST00000620219 IL15RAQ13261 267 aa12.92□□□□□ -0.34
CPSF1-213ENST00000620219 HSD17B13Q7Z5P4 300 aaPredicted RBP12.92□□□□□ -0.34
CPSF1-213ENST00000620219 TMEM186Q96B77 213 aa12.92□□□□□ -0.34
CPSF1-213ENST00000620219 PRNDQ9UKY0 176 aa12.92□□□□□ -0.34
CPSF1-213ENST00000620219 A6NNC1 897 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 SIAH2O43255 324 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 IGHV1-8P0DP01 117 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 SUB1P53999 127 aaKnown RBP eCLIP12.91□□□□□ -0.341e-6■■□□□ 14.5
CPSF1-213ENST00000620219 ID3Q02535 119 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 PEA15Q15121 130 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 VSTM2AQ8TAG5 236 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 RXFP4Q8TDU9 374 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 LOXP28300 417 aaPredicted RBP12.91□□□□□ -0.34
CPSF1-213ENST00000620219 RPL8P62917 257 aaKnown RBP12.91□□□□□ -0.34
CPSF1-213ENST00000620219 BTNL8Q6UX41 500 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 TCTEX1D1Q8N7M0 179 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 DOPEY1Q5JWR5 2465 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 NPIPB11E5RHQ5 1161 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 IFNA1P01562 189 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 IGKV1-16P04430 117 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 SPCS3P61009 180 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 TEX36Q5VZQ5 186 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 OR4C13Q8NGP0 309 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 IGFBPL1Q8WX77 278 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 NRGNQ92686 78 aa12.91□□□□□ -0.34
CPSF1-213ENST00000620219 RNASEK-C17orf49H0YIS7 233 aa12.9□□□□□ -0.34
CPSF1-213ENST00000620219 EFNA4P52798 201 aa12.9□□□□□ -0.34
CPSF1-213ENST00000620219 ZNF383Q8NA42 475 aa12.9□□□□□ -0.34
CPSF1-213ENST00000620219 RPS10P5Q9NQ39 176 aa12.9□□□□□ -0.34
CPSF1-213ENST00000620219 KALRNO60229 2985 aa12.9□□□□□ -0.34
CPSF1-213ENST00000620219 F2RL2O00254 374 aa12.9□□□□□ -0.34
CPSF1-213ENST00000620219 PPOXP50336 477 aa12.9□□□□□ -0.34
CPSF1-213ENST00000620219 ZNF787Q6DD87 383 aa12.9□□□□□ -0.34
CPSF1-213ENST00000620219 PIMREGQ9BSJ6 248 aa12.9□□□□□ -0.34
CPSF1-213ENST00000620219 TMEM147Q9BVK8 224 aa12.9□□□□□ -0.34
CPSF1-213ENST00000620219 MMP26Q9NRE1 261 aa12.9□□□□□ -0.34
CPSF1-213ENST00000620219 DOK5Q9P104 306 aa12.9□□□□□ -0.34
CPSF1-213ENST00000620219 METTL1Q9UBP6 276 aaKnown RBP12.9□□□□□ -0.34
CPSF1-213ENST00000620219 OR1L8Q8NGR8 309 aa12.9□□□□□ -0.34
CPSF1-213ENST00000620219 OR5G3P0C626 314 aa12.9□□□□□ -0.35
CPSF1-213ENST00000620219 SFTA3P0C7M3 94 aa12.9□□□□□ -0.35
CPSF1-213ENST00000620219 SULT1A2P50226 295 aa12.9□□□□□ -0.35
CPSF1-213ENST00000620219 UBE2G2P60604 165 aa12.9□□□□□ -0.35
CPSF1-213ENST00000620219 HSPE1P61604 102 aaKnown RBP12.9□□□□□ -0.35
CPSF1-213ENST00000620219 DIAPH2-AS1Q14236 149 aa12.9□□□□□ -0.35
CPSF1-213ENST00000620219 FBXL19-AS1Q494R0 122 aa12.9□□□□□ -0.35
CPSF1-213ENST00000620219 SLC24A4Q8NFF2 622 aa12.9□□□□□ -0.35
CPSF1-213ENST00000620219 PATZ1Q9HBE1 687 aaKnown RBP12.9□□□□□ -0.35
CPSF1-213ENST00000620219 PITX3O75364 302 aa12.89□□□□□ -0.35
CPSF1-213ENST00000620219 KBTBD11O94819 623 aa12.89□□□□□ -0.35
CPSF1-213ENST00000620219 SNRPCP09234 159 aaKnown RBP12.89□□□□□ -0.35
CPSF1-213ENST00000620219 GUCA2BQ16661 112 aa12.89□□□□□ -0.35
CPSF1-213ENST00000620219 GUK1Q16774 197 aa12.89□□□□□ -0.35
CPSF1-213ENST00000620219 FBXL15Q9H469 300 aa12.89□□□□□ -0.35
CPSF1-213ENST00000620219 FKBP11Q9NYL4 201 aa12.89□□□□□ -0.35
CPSF1-213ENST00000620219 C10orf55Q5SWW7 151 aa12.89□□□□□ -0.35
CPSF1-213ENST00000620219 SAA1P0DJI8 122 aaPredicted RBP12.89□□□□□ -0.35
CPSF1-213ENST00000620219 SVBPQ8N300 66 aa12.89□□□□□ -0.35
CPSF1-213ENST00000620219 YIF1AO95070 293 aa12.88□□□□□ -0.35
CPSF1-213ENST00000620219 WNT2P09544 360 aa12.88□□□□□ -0.35
CPSF1-213ENST00000620219 MC5RP33032 325 aa12.88□□□□□ -0.35
CPSF1-213ENST00000620219 MST1LQ2TV78 715 aa12.88□□□□□ -0.35
CPSF1-213ENST00000620219 ATRAIDQ6UW56 229 aa12.88□□□□□ -0.35
CPSF1-213ENST00000620219 NOTCH3Q9UM47 2321 aa12.88□□□□□ -0.35
CPSF1-213ENST00000620219 LRBAP50851 2863 aa12.88□□□□□ -0.35
CPSF1-213ENST00000620219 IGHV2-26A0A0B4J1V2 119 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms