RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 A0A0G2JRQ6 117 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 MDFIC2A0A1B0GVS7 189 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 M0R1X1 148 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 RAB29O14966 203 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 SLC31A2O15432 143 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 PITX3O75364 302 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 IGKV1-5P01602 117 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 GAPDHP04406 335 aaKnown RBP8.13□□□□□ -1.11
UPF1-213ENST00000601981 P0C879 139 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 LPAR6P43657 344 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 ZNF134P52741 427 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 AKR1C2P52895 323 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 AP2S1P53680 142 aaPredicted RBP8.13□□□□□ -1.11
UPF1-213ENST00000601981 EXOSC2Q13868 293 aaKnown RBP8.13□□□□□ -1.11
UPF1-213ENST00000601981 TPTE2P1Q5T6R2 138 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 FOXRED2Q8IWF2 684 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 SPAG16Q8N0X2 631 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 OR8H3Q8N146 312 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 LYG1Q8N1E2 194 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 GPR146Q96CH1 333 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 ADTRPQ96IZ2 230 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 ZNF48Q96MX3 618 aaPredicted RBP8.13□□□□□ -1.11
UPF1-213ENST00000601981 S1PR3Q99500 378 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 SSX3Q99909 188 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 ARPC5LQ9BPX5 153 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 C11orf1Q9H5F2 150 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 COA4Q9NYJ1 87 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 UBQLN2Q9UHD9 624 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 PITPNC1Q9UKF7 332 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 MMP24Q9Y5R2 645 aa8.13□□□□□ -1.11
UPF1-213ENST00000601981 SAA2-SAA4A0A096LPE2 208 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 A0A1W2PPE3 182 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 DNAJC9-AS1A6NH13 148 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 MSGN1A6NI15 193 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 LINC00473A8K010 186 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 CLDN34H7C241 214 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 HOXA3O43365 443 aaPredicted RBP8.12□□□□□ -1.11
UPF1-213ENST00000601981 RAMP3O60896 148 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 PROP1O75360 226 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 S1PR2O95136 353 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 SAA2P0DJI9 122 aaPredicted RBP8.12□□□□□ -1.11
UPF1-213ENST00000601981 HKR1P10072 659 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 PVALBP20472 110 aaPredicted RBP8.12□□□□□ -1.11
UPF1-213ENST00000601981 IER3P46695 156 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 P2RY1P47900 373 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 THBS3P49746 956 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 DYNLT3P51808 116 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 BRWD1-AS2P59051 145 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 ID3Q02535 119 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 TUSC1Q2TAM9 212 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 FAM71F2Q6NXP2 309 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 TGIF2LXQ8IUE1 241 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 ODF3L1Q8IXM7 274 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 ZNF251Q9BRH9 671 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 RCL1Q9Y2P8 373 aaKnown RBP8.12□□□□□ -1.11
UPF1-213ENST00000601981 PRELID3BQ9Y3B1 194 aa8.12□□□□□ -1.11
UPF1-213ENST00000601981 FAM90A9PA6NNJ1 464 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 FAM90A26D6RGX4 464 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 H3BUX3 64 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 TAAR5O14804 337 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 GPR137BO60478 399 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 HPRT1P00492 218 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 CFDP00746 253 aaPredicted RBP8.11□□□□□ -1.11
UPF1-213ENST00000601981 CRYBA1P05813 215 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 RPL12P30050 165 aaKnown RBP8.11□□□□□ -1.11
UPF1-213ENST00000601981 ZNF137PP52743 207 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 RPL15P61313 204 aaKnown RBP8.11□□□□□ -1.11
UPF1-213ENST00000601981 ZNF816Q0VGE8 651 aaPredicted RBP8.11□□□□□ -1.11
UPF1-213ENST00000601981 RPL39P5Q59GN2 51 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 OR2B11Q5JQS5 317 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 UTF1Q5T230 341 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 DMBX1Q8NFW5 382 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 OR4S2Q8NH73 311 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 STOML3Q8TAV4 291 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 SCARB1Q8WTV0 552 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 C17orf50Q8WW18 174 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 ST8SIA2Q92186 375 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 DDB2Q92466 427 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 PHYHIPLQ96FC7 376 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 ZNF471Q9BX82 626 aaPredicted RBP8.11□□□□□ -1.11
UPF1-213ENST00000601981 CACNG5Q9UF02 275 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 VPREB3Q9UKI3 123 aa8.11□□□□□ -1.11
UPF1-213ENST00000601981 SOX21Q9Y651 276 aaPredicted RBP8.11□□□□□ -1.11
UPF1-213ENST00000601981 LY6LH3BQJ8 138 aa8.1□□□□□ -1.11
UPF1-213ENST00000601981 WRBO00258 174 aa8.1□□□□□ -1.11
UPF1-213ENST00000601981 KCNAB3O43448 404 aa8.1□□□□□ -1.11
UPF1-213ENST00000601981 SSSCA1O60232 199 aa8.1□□□□□ -1.11
UPF1-213ENST00000601981 FCGR3BO75015 233 aa8.1□□□□□ -1.11
UPF1-213ENST00000601981 IGHV4-59P01825 116 aa8.1□□□□□ -1.11
UPF1-213ENST00000601981 RNASE1P07998 156 aaKnown RBP8.1□□□□□ -1.11
UPF1-213ENST00000601981 FAM106CPP0CH98 169 aa8.1□□□□□ -1.11
UPF1-213ENST00000601981 HTR2BP41595 481 aa8.1□□□□□ -1.11
UPF1-213ENST00000601981 POLR2GP62487 172 aaKnown RBP eCLIP8.1□□□□□ -1.11
UPF1-213ENST00000601981 VAMP2P63027 116 aa8.1□□□□□ -1.11
UPF1-213ENST00000601981 CXorf66Q5JRM2 361 aaPredicted RBP8.1□□□□□ -1.11
UPF1-213ENST00000601981 Q6ZRM9 215 aa8.1□□□□□ -1.11
UPF1-213ENST00000601981 ZNF833PQ6ZTB9 187 aa8.1□□□□□ -1.11
UPF1-213ENST00000601981 MOB3BQ86TA1 216 aa8.1□□□□□ -1.11
UPF1-213ENST00000601981 AJUBAQ96IF1 538 aa8.1□□□□□ -1.11
UPF1-213ENST00000601981 RAB40CQ96S21 281 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms