RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 IGLV2-23P01705 113 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 OPN1MWP04001 364 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 IGKV1D-39P04432 117 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 RLN1P04808 185 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 OPN1MW2P0DN77 364 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 OPN1MW3P0DN78 364 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 HLA-GP17693 338 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 CXCL3P19876 107 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 F2RP25116 425 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 BRS3P32247 399 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 MC5RP33032 325 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 HTR2BP41595 481 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 THBS3P49746 956 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 AP2S1P53680 142 aaPredicted RBP6.92□□□□□ -1.3
TRIM28-214ENST00000600840 F2RL1P55085 397 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 TAGLNQ01995 201 aaKnown RBP6.92□□□□□ -1.3
TRIM28-214ENST00000600840 NSUN5P1Q3KNT7 163 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 TMEM177Q53S58 311 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 C11orf88Q6PI97 169 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 MOB3BQ86TA1 216 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 NPBQ8NG41 125 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 OR8H1Q8NGG4 311 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 ADTRPQ96IZ2 230 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 RBM14Q96PK6 669 aaKnown RBP6.92□□□□□ -1.3
TRIM28-214ENST00000600840 RNF5Q99942 180 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 NPFFR1Q9GZQ6 430 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 FAM212BQ9NTI7 297 aaPredicted RBP6.92□□□□□ -1.3
TRIM28-214ENST00000600840 RBM7Q9Y580 266 aaKnown RBP6.92□□□□□ -1.3
TRIM28-214ENST00000600840 ANKRD34BA5PLL1 514 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 CRYM-AS1A6NIL9 109 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 L7N2F9 121 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 RAMP3O60896 148 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 NDUFA3O95167 84 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 MOSP00540 346 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 IGKV1D-33P01593 117 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 IGKV1-33P01594 117 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 OR4E1P0C645 316 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 FAM106CPP0CH98 169 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 RPA2P15927 270 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 CNTFRP26992 372 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 PIGPP57054 158 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 CYCSP99999 105 aaKnown RBP6.91□□□□□ -1.3
TRIM28-214ENST00000600840 POU2AF1Q16633 256 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 C4orf46Q504U0 113 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 PHLDA2Q53GA4 152 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 CLLU1Q5K131 121 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 KCTD9Q7L273 389 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 TBC1D26Q86UD7 250 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 SLC25A42Q86VD7 318 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 PDPNQ86YL7 162 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 SLC7A5P1Q8MH63 180 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 C12orf45Q8N5I9 185 aaPredicted RBP6.91□□□□□ -1.3
TRIM28-214ENST00000600840 FAM71E2Q8N5Q1 922 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 TCTEX1D1Q8N7M0 179 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 Q8N9W7 124 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 ZNF680Q8NEM1 530 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 GLYATL2Q8WU03 294 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 GALNT14Q96FL9 552 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 TP53RKQ96S44 253 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 CITED2Q99967 270 aaPredicted RBP6.91□□□□□ -1.3
TRIM28-214ENST00000600840 WNT10AQ9GZT5 417 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 SLC35D1Q9NTN3 355 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 WASHC3Q9Y3C0 194 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 NOTCH3Q9UM47 2321 aa6.91□□□□□ -1.3
TRIM28-214ENST00000600840 A0A0B4J2A0 478 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 A0A0D9SG52 128 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 TEX13DA0A0J9YY54 714 aaPredicted RBP6.9□□□□□ -1.3
TRIM28-214ENST00000600840 SH2D7A6NKC9 451 aaPredicted RBP6.9□□□□□ -1.3
TRIM28-214ENST00000600840 FBXO24O75426 580 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 OR2F2O95006 317 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 P0C879 139 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 RRASP10301 218 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 PGAM2P15259 253 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 ANXA7P20073 488 aaKnown RBP6.9□□□□□ -1.3
TRIM28-214ENST00000600840 UCP1P25874 307 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 LGALS7P47929 136 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 SSBP2P81877 361 aaPredicted RBP6.9□□□□□ -1.3
TRIM28-214ENST00000600840 ZNF345Q14585 488 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 PSG5Q15238 335 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 Q5BKY6 102 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 TCTEX1D4Q5JR98 221 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 THOC7Q6I9Y2 204 aaKnown RBP6.9□□□□□ -1.3
TRIM28-214ENST00000600840 TMEM65Q6PI78 240 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 C10orf99Q6UWK7 81 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 LIAT1Q6ZQX7 453 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 CMTM1Q8IZ96 169 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 SPAG16Q8N0X2 631 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 OR2T10Q8NGZ9 312 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 LHFPL5Q8TAF8 219 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 PHB2Q99623 299 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 SEC22CQ9BRL7 303 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 RAB18Q9NP72 206 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 MED9Q9NWA0 146 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 COMMD9Q9P000 198 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 SHPKQ9UHJ6 478 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 BOLA1Q9Y3E2 137 aa6.9□□□□□ -1.3
TRIM28-214ENST00000600840 C3orf85A0A1B0GTC6 90 aa6.89□□□□□ -1.31
TRIM28-214ENST00000600840 H0Y980 276 aa6.89□□□□□ -1.31
TRIM28-214ENST00000600840 FCN1O00602 326 aa6.89□□□□□ -1.31
TRIM28-214ENST00000600840 FCGR3BO75015 233 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms