RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TNFSF13O75888 250 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 OR9G9P0C7N8 305 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 AMTP48728 403 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 LHX2P50458 406 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 CATR1Q13166 79 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 SIGLECL1Q8N7X8 197 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 OR5B21A6NL26 309 aa15.29■□□□□ 0.04
UPF1-210ENST00000600689 HTD2P86397 168 aa15.29■□□□□ 0.04
UPF1-210ENST00000600689 PSG7Q13046 419 aa15.29■□□□□ 0.04
UPF1-210ENST00000600689 ERASQ7Z444 233 aa15.29■□□□□ 0.04
UPF1-210ENST00000600689 MDP1Q86V88 176 aa15.29■□□□□ 0.04
UPF1-210ENST00000600689 CIB3Q96Q77 187 aaPredicted RBP15.29■□□□□ 0.04
UPF1-210ENST00000600689 TXN2Q99757 166 aa15.29■□□□□ 0.04
UPF1-210ENST00000600689 DNAJC4Q9NNZ3 241 aa15.29■□□□□ 0.04
UPF1-210ENST00000600689 NAT8BQ9UHF3 227 aa15.29■□□□□ 0.04
UPF1-210ENST00000600689 SP9P0CG40 484 aa15.29■□□□□ 0.04
UPF1-210ENST00000600689 DIRC3C9JPN6 131 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 FAM90A26D6RGX4 464 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 K7EN84 100 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 RAB7AP51149 207 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 MRPL54Q6P161 138 aaKnown RBP15.28■□□□□ 0.04
UPF1-210ENST00000600689 DOLPP1Q86YN1 238 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 FAM122AQ96E09 287 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 UHRF2Q96PU4 802 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 LRFN3Q9BTN0 628 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 OBP2BQ9NPH6 170 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 MPC1Q9Y5U8 109 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 DMXL1Q9Y485 3027 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 TRBV6-6A0A0A6YYG2 114 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 PIGBOS1A0A0B4J2F0 54 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 HAND1O96004 215 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 PRAMEF5Q5TYX0 476 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 PRAMEF6Q5VXH4 476 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 MS4A5Q9H3V2 200 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 SERTAD4Q9NUC0 356 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 METRNQ9UJH8 293 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 GFRA1P56159 465 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 FOXL1Q12952 345 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 RTL8AQ9BWD3 113 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 SEPSECSQ9HD40 501 aaKnown RBP15.28■□□□□ 0.04
UPF1-210ENST00000600689 GCM1Q9NP62 436 aa15.28■□□□□ 0.04
UPF1-210ENST00000600689 TRAV3A0A0B4J244 114 aa15.27■□□□□ 0.04
UPF1-210ENST00000600689 CHRNB4P30926 498 aa15.27■□□□□ 0.04
UPF1-210ENST00000600689 SPRY4Q9C004 299 aa15.27■□□□□ 0.04
UPF1-210ENST00000600689 RNASE7Q9H1E1 156 aaKnown RBP15.27■□□□□ 0.04
UPF1-210ENST00000600689 GNB4Q9HAV0 340 aa15.27■□□□□ 0.04
UPF1-210ENST00000600689 KCNIP2Q9NS61 270 aa15.27■□□□□ 0.04
UPF1-210ENST00000600689 TBL2Q9Y4P3 447 aaKnown RBP15.27■□□□□ 0.04
UPF1-210ENST00000600689 M0QZK8 103 aa15.27■□□□□ 0.03
UPF1-210ENST00000600689 MAJINQ3KP22 176 aa15.27■□□□□ 0.03
UPF1-210ENST00000600689 PARD6GQ9BYG4 376 aaPredicted RBP15.27■□□□□ 0.03
UPF1-210ENST00000600689 MAP1BP46821 2468 aaKnown RBP15.27■□□□□ 0.03
UPF1-210ENST00000600689 M0R296 226 aa15.26■□□□□ 0.03
UPF1-210ENST00000600689 PLGLB1Q02325 96 aa15.26■□□□□ 0.03
UPF1-210ENST00000600689 SPATA45Q537H7 98 aa15.26■□□□□ 0.03
UPF1-210ENST00000600689 NHLRC2Q8NBF2 726 aa15.26■□□□□ 0.03
UPF1-210ENST00000600689 ST6GALNAC3Q8NDV1 305 aa15.26■□□□□ 0.03
UPF1-210ENST00000600689 OR4P4Q8NGL7 312 aa15.26■□□□□ 0.03
UPF1-210ENST00000600689 RCHY1Q96PM5 261 aa15.26■□□□□ 0.03
UPF1-210ENST00000600689 CBY1Q9Y3M2 126 aa15.26■□□□□ 0.03
UPF1-210ENST00000600689 CDX4O14627 284 aaPredicted RBP15.26■□□□□ 0.03
UPF1-210ENST00000600689 CD59P13987 128 aa15.26■□□□□ 0.03
UPF1-210ENST00000600689 Q6ZN92 141 aa15.26■□□□□ 0.03
UPF1-210ENST00000600689 Q6ZR03 302 aa15.26■□□□□ 0.03
UPF1-210ENST00000600689 Q8N7P7 452 aa15.26■□□□□ 0.03
UPF1-210ENST00000600689 CA1P00915 261 aaPredicted RBP15.25■□□□□ 0.03
UPF1-210ENST00000600689 MRPS11P82912 194 aaKnown RBP15.25■□□□□ 0.03
UPF1-210ENST00000600689 MOB1BQ7L9L4 216 aa15.25■□□□□ 0.03
UPF1-210ENST00000600689 LINC00596Q86U02 117 aa15.25■□□□□ 0.03
UPF1-210ENST00000600689 MMD2Q8IY49 270 aa15.25■□□□□ 0.03
UPF1-210ENST00000600689 YPEL1O60688 119 aa15.25■□□□□ 0.03
UPF1-210ENST00000600689 DHRS13Q6UX07 377 aa15.25■□□□□ 0.03
UPF1-210ENST00000600689 TREML4Q6UXN2 200 aa15.25■□□□□ 0.03
UPF1-210ENST00000600689 TEX43Q6ZNM6 134 aa15.25■□□□□ 0.03
UPF1-210ENST00000600689 STPG4Q8N801 248 aa15.25■□□□□ 0.03
UPF1-210ENST00000600689 YPEL2Q96QA6 119 aa15.25■□□□□ 0.03
UPF1-210ENST00000600689 MGST2Q99735 147 aa15.25■□□□□ 0.03
UPF1-210ENST00000600689 WDR83OSQ9Y284 106 aa15.25■□□□□ 0.03
UPF1-210ENST00000600689 MRPS18CQ9Y3D5 142 aaKnown RBP15.25■□□□□ 0.03
UPF1-210ENST00000600689 TTC28Q96AY4 2481 aa15.25■□□□□ 0.03
UPF1-210ENST00000600689 CGAP01215 116 aa15.25■□□□□ 0.03
UPF1-210ENST00000600689 MGST1P10620 155 aaKnown RBP15.25■□□□□ 0.03
UPF1-210ENST00000600689 ARR3P36575 388 aa15.25■□□□□ 0.03
UPF1-210ENST00000600689 HINT1P49773 126 aaPredicted RBP15.25■□□□□ 0.03
UPF1-210ENST00000600689 SUMO1P63165 101 aaKnown RBP15.25■□□□□ 0.03
UPF1-210ENST00000600689 LCN12Q6JVE5 192 aa15.25■□□□□ 0.03
UPF1-210ENST00000600689 STARD4Q96DR4 205 aa15.25■□□□□ 0.03
UPF1-210ENST00000600689 ZNF703Q9H7S9 590 aaPredicted RBP15.25■□□□□ 0.03
UPF1-210ENST00000600689 TMEM30CPA0ZSE6 113 aa15.24■□□□□ 0.03
UPF1-210ENST00000600689 TMPRSS2O15393 492 aa15.24■□□□□ 0.03
UPF1-210ENST00000600689 MYOD1P15172 320 aa15.24■□□□□ 0.03
UPF1-210ENST00000600689 RELQ04864 619 aaPredicted RBP15.24■□□□□ 0.03
UPF1-210ENST00000600689 OR13A1Q8NGR1 328 aa15.24■□□□□ 0.03
UPF1-210ENST00000600689 OR4A16Q8NH70 328 aa15.24■□□□□ 0.03
UPF1-210ENST00000600689 LEAP2Q969E1 77 aa15.24■□□□□ 0.03
UPF1-210ENST00000600689 BOD1L1Q8NFC6 3051 aa15.24■□□□□ 0.03
UPF1-210ENST00000600689 UBE2NP61088 152 aaKnown RBP15.24■□□□□ 0.03
UPF1-210ENST00000600689 C20orf144Q9BQM9 153 aa15.24■□□□□ 0.03
UPF1-210ENST00000600689 ZNF253O75346 499 aa15.23■□□□□ 0.03
UPF1-210ENST00000600689 ZNF883P0CG24 379 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms