RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 CHPT1Q8WUD6 406 aa13.23□□□□□ -0.29
USHBP1-210ENST00000600286 OR51J1Q9H342 316 aa13.23□□□□□ -0.29
USHBP1-210ENST00000600286 PALMDQ9NP74 551 aa13.23□□□□□ -0.29
USHBP1-210ENST00000600286 PARP11Q9NR21 331 aa13.23□□□□□ -0.29
USHBP1-210ENST00000600286 BET1LQ9NYM9 111 aa13.23□□□□□ -0.29
USHBP1-210ENST00000600286 TBC1D24Q9ULP9 559 aa13.23□□□□□ -0.29
USHBP1-210ENST00000600286 NUBP2Q9Y5Y2 271 aa13.23□□□□□ -0.29
USHBP1-210ENST00000600286 ARPC1BO15143 372 aaKnown RBP13.22□□□□□ -0.29
USHBP1-210ENST00000600286 KBTBD11O94819 623 aa13.22□□□□□ -0.29
USHBP1-210ENST00000600286 CA2P00918 260 aa13.22□□□□□ -0.29
USHBP1-210ENST00000600286 CRYGBP07316 175 aa13.22□□□□□ -0.29
USHBP1-210ENST00000600286 MDKP21741 143 aaPredicted RBP13.22□□□□□ -0.29
USHBP1-210ENST00000600286 BTCP35070 178 aa13.22□□□□□ -0.29
USHBP1-210ENST00000600286 CX3CL1P78423 397 aa13.22□□□□□ -0.29
USHBP1-210ENST00000600286 FXYD3Q14802 87 aa13.22□□□□□ -0.29
USHBP1-210ENST00000600286 TNXAQ16473 311 aa13.22□□□□□ -0.29
USHBP1-210ENST00000600286 PRSS8Q16651 343 aa13.22□□□□□ -0.29
USHBP1-210ENST00000600286 C4orf46Q504U0 113 aa13.22□□□□□ -0.29
USHBP1-210ENST00000600286 OR4A47Q6IF82 309 aa13.22□□□□□ -0.29
USHBP1-210ENST00000600286 CADM3Q8N126 398 aa13.22□□□□□ -0.29
USHBP1-210ENST00000600286 LGI3Q8N145 548 aa13.22□□□□□ -0.29
USHBP1-210ENST00000600286 TMEM167AQ8TBQ9 72 aa13.22□□□□□ -0.29
USHBP1-210ENST00000600286 C20orf85Q9H1P6 137 aa13.22□□□□□ -0.29
USHBP1-210ENST00000600286 TMEM140Q9NV12 185 aa13.22□□□□□ -0.29
USHBP1-210ENST00000600286 FKBP11Q9NYL4 201 aa13.22□□□□□ -0.29
USHBP1-210ENST00000600286 IGHV7-81A0A0B4J1V7 117 aa13.21□□□□□ -0.29
USHBP1-210ENST00000600286 RBMXL2O75526 392 aaKnown RBP13.21□□□□□ -0.29
USHBP1-210ENST00000600286 CDS2O95674 445 aa13.21□□□□□ -0.29
USHBP1-210ENST00000600286 H2AFB2P0C5Z0 115 aa13.21□□□□□ -0.29
USHBP1-210ENST00000600286 VDAC1P21796 283 aa13.21□□□□□ -0.29
USHBP1-210ENST00000600286 G6PCP35575 357 aa13.21□□□□□ -0.29
USHBP1-210ENST00000600286 COMPP49747 757 aaPredicted RBP13.21□□□□□ -0.29
USHBP1-210ENST00000600286 RPL8P62917 257 aaKnown RBP13.21□□□□□ -0.29
USHBP1-210ENST00000600286 IFITM3Q01628 133 aa13.21□□□□□ -0.29
USHBP1-210ENST00000600286 AWAT1Q58HT5 328 aa13.21□□□□□ -0.29
USHBP1-210ENST00000600286 PLET1Q6UQ28 207 aa13.21□□□□□ -0.29
USHBP1-210ENST00000600286 PUSL1Q8N0Z8 303 aaKnown RBP13.21□□□□□ -0.29
USHBP1-210ENST00000600286 OR4A16Q8NH70 328 aa13.21□□□□□ -0.29
USHBP1-210ENST00000600286 GLYATL2Q8WU03 294 aa13.21□□□□□ -0.29
USHBP1-210ENST00000600286 ARPC1AQ92747 370 aa13.21□□□□□ -0.29
USHBP1-210ENST00000600286 TAF15Q92804 592 aaKnown RBP eCLIP13.21□□□□□ -0.29
USHBP1-210ENST00000600286 RBPMSQ93062 196 aaKnown RBP13.21□□□□□ -0.29
USHBP1-210ENST00000600286 IL22RA2Q969J5 263 aa13.21□□□□□ -0.29
USHBP1-210ENST00000600286 TMEM230Q96A57 120 aa13.21□□□□□ -0.29
USHBP1-210ENST00000600286 COMMD5Q9GZQ3 224 aa13.21□□□□□ -0.29
USHBP1-210ENST00000600286 FLVCR2Q9UPI3 526 aa13.21□□□□□ -0.29
USHBP1-210ENST00000600286 UPK2O00526 184 aa13.2□□□□□ -0.3
USHBP1-210ENST00000600286 FCN1O00602 326 aa13.2□□□□□ -0.3
USHBP1-210ENST00000600286 SFT2D2O95562 160 aa13.2□□□□□ -0.3
USHBP1-210ENST00000600286 DCTN2Q13561 401 aaKnown RBP13.2□□□□□ -0.3
USHBP1-210ENST00000600286 TMEM268Q5VZI3 342 aa13.2□□□□□ -0.3
USHBP1-210ENST00000600286 Q6ZS46 218 aa13.2□□□□□ -0.3
USHBP1-210ENST00000600286 FAM219AQ8IW50 185 aa13.2□□□□□ -0.3
USHBP1-210ENST00000600286 C3orf56Q8N813 242 aa13.2□□□□□ -0.3
USHBP1-210ENST00000600286 TMEM68Q96MH6 324 aa13.2□□□□□ -0.3
USHBP1-210ENST00000600286 PHB2Q99623 299 aa13.2□□□□□ -0.3
USHBP1-210ENST00000600286 HSPB9Q9BQS6 159 aa13.2□□□□□ -0.3
USHBP1-210ENST00000600286 ALX4Q9H161 411 aaPredicted RBP13.2□□□□□ -0.3
USHBP1-210ENST00000600286 ZNF430Q9H8G1 570 aaPredicted RBP13.2□□□□□ -0.3
USHBP1-210ENST00000600286 NUDT15Q9NV35 164 aa13.2□□□□□ -0.3
USHBP1-210ENST00000600286 TENM1Q9UKZ4 2725 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 TRAV6A0A075B6T7 132 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 PSMB11A5LHX3 300 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 HLA-AP01891 365 aaKnown RBP13.19□□□□□ -0.3
USHBP1-210ENST00000600286 IGF1P05019 195 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 FGF2P09038 288 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 OR4E1P0C645 316 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 HLA-GP17693 338 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 PJVKQ0ZLH3 352 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 TMEM187Q14656 261 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 STPG2Q8N412 459 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 KLHDC1Q8N7A1 406 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 DUSP18Q8NEJ0 188 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 COQ8AQ8NI60 647 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 GRPEL2Q8TAA5 225 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 CASTOR1Q8WTX7 329 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 SEC22AQ96IW7 307 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 TMEM56Q96MV1 263 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 SPIN2AQ99865 258 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 SPIN2BQ9BPZ2 258 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 TPSG1Q9NRR2 321 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 SERTAD4Q9NUC0 356 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 PRNDQ9UKY0 176 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 TMEM56-RWDD3S4R434 201 aa13.19□□□□□ -0.3
USHBP1-210ENST00000600286 TRAV41A0A0B4J266 112 aa13.18□□□□□ -0.3
USHBP1-210ENST00000600286 ANXA7P20073 488 aaKnown RBP13.18□□□□□ -0.3
USHBP1-210ENST00000600286 RPL27AP46776 148 aaKnown RBP13.18□□□□□ -0.3
USHBP1-210ENST00000600286 PPP1R1AQ13522 171 aa13.18□□□□□ -0.3
USHBP1-210ENST00000600286 MRPL41Q8IXM3 137 aaKnown RBP13.18□□□□□ -0.3
USHBP1-210ENST00000600286 SELENOHQ8IZQ5 122 aaKnown RBP13.18□□□□□ -0.3
USHBP1-210ENST00000600286 COMMD1Q8N668 190 aa13.18□□□□□ -0.3
USHBP1-210ENST00000600286 SGMS2Q8NHU3 365 aa13.18□□□□□ -0.3
USHBP1-210ENST00000600286 PDCD10Q9BUL8 212 aa13.18□□□□□ -0.3
USHBP1-210ENST00000600286 CACFD1Q9UGQ2 172 aa13.18□□□□□ -0.3
USHBP1-210ENST00000600286 ZNF580Q9UK33 172 aa13.18□□□□□ -0.3
USHBP1-210ENST00000600286 DUXBA0A1W2PPF3 345 aa13.17□□□□□ -0.3
USHBP1-210ENST00000600286 C9orf170A2RU37 121 aa13.17□□□□□ -0.3
USHBP1-210ENST00000600286 LINC01548A6NM66 108 aa13.17□□□□□ -0.3
USHBP1-210ENST00000600286 ATP6V0E1O15342 81 aa13.17□□□□□ -0.3
USHBP1-210ENST00000600286 DHFRP00374 187 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms