RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 SRSF4Q08170 494 aaKnown RBP14.29□□□□□ -0.12
LIG1-216ENST00000598938 OR4A47Q6IF82 309 aa14.29□□□□□ -0.12
LIG1-216ENST00000598938 SSX9Q7RTT3 188 aa14.29□□□□□ -0.12
LIG1-216ENST00000598938 CENPVQ7Z7K6 275 aaPredicted RBP14.29□□□□□ -0.12
LIG1-216ENST00000598938 ADAD2Q8NCV1 583 aaKnown RBP14.29□□□□□ -0.12
LIG1-216ENST00000598938 TMEM230Q96A57 120 aa14.29□□□□□ -0.12
LIG1-216ENST00000598938 R3HDM4Q96D70 268 aa14.29□□□□□ -0.12
LIG1-216ENST00000598938 NAA60Q9H7X0 242 aa14.29□□□□□ -0.12
LIG1-216ENST00000598938 ZNF430Q9H8G1 570 aaPredicted RBP14.29□□□□□ -0.12
LIG1-216ENST00000598938 BET1LQ9NYM9 111 aa14.29□□□□□ -0.12
LIG1-216ENST00000598938 FBXO7Q9Y3I1 522 aa14.29□□□□□ -0.12
LIG1-216ENST00000598938 MARCH11A6NNE9 402 aa14.28□□□□□ -0.12
LIG1-216ENST00000598938 CREBL2O60519 120 aaPredicted RBP14.28□□□□□ -0.12
LIG1-216ENST00000598938 IGKV1-39P01597 117 aa14.28□□□□□ -0.12
LIG1-216ENST00000598938 IGKV1D-39P04432 117 aa14.28□□□□□ -0.12
LIG1-216ENST00000598938 IL6RP08887 468 aaPredicted RBP14.28□□□□□ -0.12
LIG1-216ENST00000598938 CFHR3Q02985 330 aa14.28□□□□□ -0.12
LIG1-216ENST00000598938 RBMS2Q15434 407 aaKnown RBP14.28□□□□□ -0.12
LIG1-216ENST00000598938 MMD2Q8IY49 270 aa14.28□□□□□ -0.12
LIG1-216ENST00000598938 CADM3Q8N126 398 aa14.28□□□□□ -0.12
LIG1-216ENST00000598938 OR4A5Q8NH83 315 aa14.28□□□□□ -0.12
LIG1-216ENST00000598938 ARPC1AQ92747 370 aa14.28□□□□□ -0.12
LIG1-216ENST00000598938 PSMB11A5LHX3 300 aa14.27□□□□□ -0.13
LIG1-216ENST00000598938 M0QZ24 198 aa14.27□□□□□ -0.13
LIG1-216ENST00000598938 LYRM1O43325 122 aa14.27□□□□□ -0.13
LIG1-216ENST00000598938 UPK1BO75841 260 aa14.27□□□□□ -0.13
LIG1-216ENST00000598938 SERPINE2P07093 398 aa14.27□□□□□ -0.13
LIG1-216ENST00000598938 RPA2P15927 270 aa14.27□□□□□ -0.13
LIG1-216ENST00000598938 UCP1P25874 307 aa14.27□□□□□ -0.13
LIG1-216ENST00000598938 GNB1P62873 340 aa14.27□□□□□ -0.13
LIG1-216ENST00000598938 FXYD3Q14802 87 aa14.27□□□□□ -0.13
LIG1-216ENST00000598938 SP6Q3SY56 376 aa14.27□□□□□ -0.13
LIG1-216ENST00000598938 C19orf54Q5BKX5 351 aa14.27□□□□□ -0.13
LIG1-216ENST00000598938 C10orf99Q6UWK7 81 aa14.27□□□□□ -0.13
LIG1-216ENST00000598938 OR5AU1Q8NGC0 362 aa14.27□□□□□ -0.13
LIG1-216ENST00000598938 GON7Q9BXV9 100 aa14.27□□□□□ -0.13
LIG1-216ENST00000598938 TMEM140Q9NV12 185 aa14.27□□□□□ -0.13
LIG1-216ENST00000598938 NUBP2Q9Y5Y2 271 aa14.27□□□□□ -0.13
LIG1-216ENST00000598938 TEX13DA0A0J9YY54 714 aaPredicted RBP14.26□□□□□ -0.13
LIG1-216ENST00000598938 NDUFB6O95139 128 aa14.26□□□□□ -0.13
LIG1-216ENST00000598938 CNIH1O95406 144 aa14.26□□□□□ -0.13
LIG1-216ENST00000598938 KRASP01116 189 aa14.26□□□□□ -0.13
LIG1-216ENST00000598938 VDAC1P21796 283 aa14.26□□□□□ -0.13
LIG1-216ENST00000598938 G6PCP35575 357 aa14.26□□□□□ -0.13
LIG1-216ENST00000598938 ERVK-16P61578 105 aa14.26□□□□□ -0.13
LIG1-216ENST00000598938 SLC35B1P78383 322 aa14.26□□□□□ -0.13
LIG1-216ENST00000598938 SGPP2Q8IWX5 399 aa14.26□□□□□ -0.13
LIG1-216ENST00000598938 DMBX1Q8NFW5 382 aa14.26□□□□□ -0.13
LIG1-216ENST00000598938 GALNT14Q96FL9 552 aa14.26□□□□□ -0.13
LIG1-216ENST00000598938 SEC22AQ96IW7 307 aa14.26□□□□□ -0.13
LIG1-216ENST00000598938 TMEM222Q9H0R3 208 aa14.26□□□□□ -0.13
LIG1-216ENST00000598938 TRAV41A0A0B4J266 112 aa14.25□□□□□ -0.13
LIG1-216ENST00000598938 G3V318 75 aa14.25□□□□□ -0.13
LIG1-216ENST00000598938 UPK2O00526 184 aa14.25□□□□□ -0.13
LIG1-216ENST00000598938 FBXO24O75426 580 aa14.25□□□□□ -0.13
LIG1-216ENST00000598938 FGF2P09038 288 aa14.25□□□□□ -0.13
LIG1-216ENST00000598938 OR5AC1P0C628 307 aa14.25□□□□□ -0.13
LIG1-216ENST00000598938 CD28P10747 220 aa14.25□□□□□ -0.13
LIG1-216ENST00000598938 PPIFP30405 207 aaKnown RBP14.25□□□□□ -0.13
LIG1-216ENST00000598938 MAS1LP35410 378 aa14.25□□□□□ -0.13
LIG1-216ENST00000598938 TNXAQ16473 311 aa14.25□□□□□ -0.13
LIG1-216ENST00000598938 ZNF329Q86UD4 541 aa14.25□□□□□ -0.13
LIG1-216ENST00000598938 GRPEL2Q8TAA5 225 aa14.25□□□□□ -0.13
LIG1-216ENST00000598938 ABHD5Q8WTS1 349 aa14.25□□□□□ -0.13
LIG1-216ENST00000598938 GLYATL2Q8WU03 294 aa14.25□□□□□ -0.13
LIG1-216ENST00000598938 FAM103A1Q9BTL3 118 aaKnown RBP14.25□□□□□ -0.13
LIG1-216ENST00000598938 TBC1D24Q9ULP9 559 aa14.25□□□□□ -0.13
LIG1-216ENST00000598938 WSB1Q9Y6I7 421 aa14.25□□□□□ -0.13
LIG1-216ENST00000598938 TRAV3A0A0B4J244 114 aa14.24□□□□□ -0.13
LIG1-216ENST00000598938 AKR1C4P17516 323 aa14.24□□□□□ -0.13
LIG1-216ENST00000598938 RPL8P62917 257 aaKnown RBP14.24□□□□□ -0.13
LIG1-216ENST00000598938 SUPT4H1P63272 117 aaKnown RBP14.24□□□□□ -0.13
LIG1-216ENST00000598938 IFITM3Q01628 133 aa14.24□□□□□ -0.13
LIG1-216ENST00000598938 DHODHQ02127 395 aa14.24□□□□□ -0.13
LIG1-216ENST00000598938 TMEM267Q0VDI3 215 aaPredicted RBP14.24□□□□□ -0.13
LIG1-216ENST00000598938 ASAH1Q13510 395 aa14.24□□□□□ -0.13
LIG1-216ENST00000598938 ECSCRQ19T08 205 aa14.24□□□□□ -0.13
LIG1-216ENST00000598938 AKIRIN2Q53H80 203 aa14.24□□□□□ -0.13
LIG1-216ENST00000598938 TCTEX1D4Q5JR98 221 aa14.24□□□□□ -0.13
LIG1-216ENST00000598938 TMED4Q7Z7H5 227 aa14.24□□□□□ -0.13
LIG1-216ENST00000598938 COMMD1Q8N668 190 aa14.24□□□□□ -0.13
LIG1-216ENST00000598938 C11orf44Q8N8P7 122 aa14.24□□□□□ -0.13
LIG1-216ENST00000598938 MINDY2Q8NBR6 621 aa14.24□□□□□ -0.13
LIG1-216ENST00000598938 OR4X2Q8NGF9 303 aa14.24□□□□□ -0.13
LIG1-216ENST00000598938 SRSF12Q8WXF0 261 aaKnown RBP14.24□□□□□ -0.13
LIG1-216ENST00000598938 PLXNB1O43157 2135 aa14.23□□□□□ -0.13
LIG1-216ENST00000598938 ACTL6BO94805 426 aa14.23□□□□□ -0.13
LIG1-216ENST00000598938 CDS2O95674 445 aa14.23□□□□□ -0.13
LIG1-216ENST00000598938 IGHG4P01861 327 aa14.23□□□□□ -0.13
LIG1-216ENST00000598938 HLA-GP17693 338 aa14.23□□□□□ -0.13
LIG1-216ENST00000598938 CD83Q01151 205 aa14.23□□□□□ -0.13
LIG1-216ENST00000598938 TMEM187Q14656 261 aa14.23□□□□□ -0.13
LIG1-216ENST00000598938 TRIM16LQ309B1 348 aa14.23□□□□□ -0.13
LIG1-216ENST00000598938 TMEM128Q5BJH2 165 aa14.23□□□□□ -0.13
LIG1-216ENST00000598938 C10orf55Q5SWW7 151 aa14.23□□□□□ -0.13
LIG1-216ENST00000598938 SLC25A42Q86VD7 318 aa14.23□□□□□ -0.13
LIG1-216ENST00000598938 CENPSQ8N2Z9 138 aa14.23□□□□□ -0.13
LIG1-216ENST00000598938 LFNGQ8NES3 379 aa14.23□□□□□ -0.13
LIG1-216ENST00000598938 LHFPL5Q8TAF8 219 aa14.23□□□□□ -0.13
LIG1-216ENST00000598938 KCNIP3Q9Y2W7 256 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms