RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 ERVK-16P61578 105 aa13.48□□□□□ -0.25
SHKBP1-212ENST00000596163 C18orf65Q6ZTR6 163 aa13.48□□□□□ -0.25
SHKBP1-212ENST00000596163 VKORC1L1Q8N0U8 176 aa13.48□□□□□ -0.25
SHKBP1-212ENST00000596163 ZFAND1Q8TCF1 268 aa13.48□□□□□ -0.25
SHKBP1-212ENST00000596163 SRSF12Q8WXF0 261 aaKnown RBP13.48□□□□□ -0.25
SHKBP1-212ENST00000596163 SOSTQ9BQB4 213 aa13.48□□□□□ -0.25
SHKBP1-212ENST00000596163 KLK15Q9H2R5 256 aa13.48□□□□□ -0.25
SHKBP1-212ENST00000596163 ZNF355PQ9NSJ1 428 aa13.48□□□□□ -0.25
SHKBP1-212ENST00000596163 FAM212BQ9NTI7 297 aaPredicted RBP13.48□□□□□ -0.25
SHKBP1-212ENST00000596163 BET1LQ9NYM9 111 aa13.48□□□□□ -0.25
SHKBP1-212ENST00000596163 COMMD9Q9P000 198 aa13.48□□□□□ -0.25
SHKBP1-212ENST00000596163 CCL24O00175 119 aa13.47□□□□□ -0.25
SHKBP1-212ENST00000596163 DUS4LO95620 317 aaKnown RBP13.47□□□□□ -0.25
SHKBP1-212ENST00000596163 AKAIN1P0CW23 69 aa13.47□□□□□ -0.25
SHKBP1-212ENST00000596163 ECI1P42126 302 aa13.47□□□□□ -0.25
SHKBP1-212ENST00000596163 SSBP2P81877 361 aaPredicted RBP13.47□□□□□ -0.25
SHKBP1-212ENST00000596163 MRGPRG-AS1Q2M3A8 158 aa13.47□□□□□ -0.25
SHKBP1-212ENST00000596163 PHLDA2Q53GA4 152 aa13.47□□□□□ -0.25
SHKBP1-212ENST00000596163 SSX9Q7RTT3 188 aa13.47□□□□□ -0.25
SHKBP1-212ENST00000596163 OR5T1Q8NG75 326 aa13.47□□□□□ -0.25
SHKBP1-212ENST00000596163 TERB2Q8NHR7 220 aa13.47□□□□□ -0.25
SHKBP1-212ENST00000596163 HRASLSQ9HDD0 168 aa13.47□□□□□ -0.25
SHKBP1-212ENST00000596163 SOX15O60248 233 aa13.46□□□□□ -0.25
SHKBP1-212ENST00000596163 BRI3O95415 125 aa13.46□□□□□ -0.25
SHKBP1-212ENST00000596163 PTBP1P26599 531 aaKnown RBP eCLIP13.46□□□□□ -0.25
SHKBP1-212ENST00000596163 LPAR6P43657 344 aa13.46□□□□□ -0.25
SHKBP1-212ENST00000596163 RPL8P62917 257 aaKnown RBP13.46□□□□□ -0.25
SHKBP1-212ENST00000596163 RUNX1Q01196 453 aa13.46□□□□□ -0.25
SHKBP1-212ENST00000596163 POU2AF1Q16633 256 aa13.46□□□□□ -0.25
SHKBP1-212ENST00000596163 SCGB2B2Q4G0G5 96 aa13.46□□□□□ -0.25
SHKBP1-212ENST00000596163 OR4A47Q6IF82 309 aa13.46□□□□□ -0.25
SHKBP1-212ENST00000596163 SLC25A42Q86VD7 318 aa13.46□□□□□ -0.25
SHKBP1-212ENST00000596163 LHFPL1Q86WI0 220 aa13.46□□□□□ -0.25
SHKBP1-212ENST00000596163 MRPL41Q8IXM3 137 aaKnown RBP13.46□□□□□ -0.25
SHKBP1-212ENST00000596163 DMBX1Q8NFW5 382 aa13.46□□□□□ -0.25
SHKBP1-212ENST00000596163 RCC1LQ96I51 464 aaKnown RBP13.46□□□□□ -0.25
SHKBP1-212ENST00000596163 MCRIP2Q9BUT9 160 aaKnown RBP13.46□□□□□ -0.25
SHKBP1-212ENST00000596163 GPR61Q9BZJ8 451 aa13.46□□□□□ -0.25
SHKBP1-212ENST00000596163 A0A0G2JLM5 398 aa13.45□□□□□ -0.26
SHKBP1-212ENST00000596163 S1PR2O95136 353 aa13.45□□□□□ -0.26
SHKBP1-212ENST00000596163 TRGV3P03979 118 aa13.45□□□□□ -0.26
SHKBP1-212ENST00000596163 RPL27AP46776 148 aaKnown RBP13.45□□□□□ -0.26
SHKBP1-212ENST00000596163 TPPP2P59282 170 aa13.45□□□□□ -0.26
SHKBP1-212ENST00000596163 KIAA0141Q14154 515 aaPredicted RBP13.45□□□□□ -0.26
SHKBP1-212ENST00000596163 PYDC2Q56P42 97 aa13.45□□□□□ -0.26
SHKBP1-212ENST00000596163 ETV3LQ6ZN32 361 aa13.45□□□□□ -0.26
SHKBP1-212ENST00000596163 TBC1D26Q86UD7 250 aa13.45□□□□□ -0.26
SHKBP1-212ENST00000596163 LINC00482Q8N8I6 264 aa13.45□□□□□ -0.26
SHKBP1-212ENST00000596163 RAX2Q96IS3 184 aa13.45□□□□□ -0.26
SHKBP1-212ENST00000596163 MS4A10Q96PG2 267 aa13.45□□□□□ -0.26
SHKBP1-212ENST00000596163 P2RX4Q99571 388 aa13.45□□□□□ -0.26
SHKBP1-212ENST00000596163 THAP7Q9BT49 309 aaPredicted RBP13.45□□□□□ -0.26
SHKBP1-212ENST00000596163 COA4Q9NYJ1 87 aa13.45□□□□□ -0.26
SHKBP1-212ENST00000596163 VWFP04275 2813 aa13.45□□□□□ -0.26
SHKBP1-212ENST00000596163 FGF2P09038 288 aa13.44□□□□□ -0.26
SHKBP1-212ENST00000596163 OR9G9P0C7N8 305 aa13.44□□□□□ -0.26
SHKBP1-212ENST00000596163 HLA-GP17693 338 aa13.44□□□□□ -0.26
SHKBP1-212ENST00000596163 RND3P61587 244 aa13.44□□□□□ -0.26
SHKBP1-212ENST00000596163 SPANXN2Q5MJ10 180 aa13.44□□□□□ -0.26
SHKBP1-212ENST00000596163 SAMD5Q5TGI4 173 aa13.44□□□□□ -0.26
SHKBP1-212ENST00000596163 CADM3Q8N126 398 aa13.44□□□□□ -0.26
SHKBP1-212ENST00000596163 CCDC71LQ8N9Z2 235 aa13.44□□□□□ -0.26
SHKBP1-212ENST00000596163 OR4D10Q8NGI6 311 aa13.44□□□□□ -0.26
SHKBP1-212ENST00000596163 OR1N2Q8NGR9 330 aa13.44□□□□□ -0.26
SHKBP1-212ENST00000596163 DPF1Q92782 380 aa13.44□□□□□ -0.26
SHKBP1-212ENST00000596163 PRRT1Q99946 306 aa13.44□□□□□ -0.26
SHKBP1-212ENST00000596163 SLC2A9Q9NRM0 540 aa13.44□□□□□ -0.26
SHKBP1-212ENST00000596163 COPZ2Q9P299 210 aa13.44□□□□□ -0.26
SHKBP1-212ENST00000596163 C13orf42A0A1B0GVH6 325 aa13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 ANKRD20A5PA0PJZ0 165 aa13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 DPPA5A6NC42 116 aa13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 MARCH11A6NNE9 402 aa13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 I3L521 148 aa13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 UPK2O00526 184 aa13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 PPP5CP53041 499 aa13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 AP3S2P59780 193 aa13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 SURF2Q15527 256 aaPredicted RBP13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 ASPHD1Q5U4P2 390 aa13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 TTC9CQ8N5M4 171 aa13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 OR11H1Q8NG94 326 aa13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 CASTOR1Q8WTX7 329 aa13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 FYTTD1Q96QD9 318 aaKnown RBP13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 COMMD5Q9GZQ3 224 aa13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 GNB4Q9HAV0 340 aa13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 TMEM140Q9NV12 185 aa13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 SCP2D1Q9UJQ7 156 aa13.43□□□□□ -0.26
SHKBP1-212ENST00000596163 G3V4G9 280 aa13.42□□□□□ -0.26
SHKBP1-212ENST00000596163 B3GALNT1O75752 331 aa13.42□□□□□ -0.26
SHKBP1-212ENST00000596163 SNAPC5O75971 98 aa13.42□□□□□ -0.26
SHKBP1-212ENST00000596163 SERPINE2P07093 398 aa13.42□□□□□ -0.26
SHKBP1-212ENST00000596163 CTSDP07339 412 aaPredicted RBP13.42□□□□□ -0.26
SHKBP1-212ENST00000596163 IL6RP08887 468 aaPredicted RBP13.42□□□□□ -0.26
SHKBP1-212ENST00000596163 LGALS1P09382 135 aaKnown RBP13.42□□□□□ -0.26
SHKBP1-212ENST00000596163 OR8U8P0C7N1 319 aa13.42□□□□□ -0.26
SHKBP1-212ENST00000596163 ZNF735P0CB33 412 aa13.42□□□□□ -0.26
SHKBP1-212ENST00000596163 IGLL1P15814 213 aa13.42□□□□□ -0.26
SHKBP1-212ENST00000596163 RPA2P15927 270 aa13.42□□□□□ -0.26
SHKBP1-212ENST00000596163 FAUP35544 74 aaKnown RBP13.42□□□□□ -0.26
SHKBP1-212ENST00000596163 PIGPP57054 158 aa13.42□□□□□ -0.26
SHKBP1-212ENST00000596163 RAB25P57735 213 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms