RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 S1PR2O95136 353 aa11.33□□□□□ -0.6
VRK3-206ENST00000594090 S100GP29377 79 aa11.33□□□□□ -0.6
VRK3-206ENST00000594090 TAS2R31P59538 309 aa11.33□□□□□ -0.6
VRK3-206ENST00000594090 POU2AF1Q16633 256 aa11.33□□□□□ -0.6
VRK3-206ENST00000594090 C10orf55Q5SWW7 151 aa11.33□□□□□ -0.6
VRK3-206ENST00000594090 SAMD5Q5TGI4 173 aa11.33□□□□□ -0.6
VRK3-206ENST00000594090 C1QL4Q86Z23 238 aa11.33□□□□□ -0.6
VRK3-206ENST00000594090 MRPL41Q8IXM3 137 aaKnown RBP11.33□□□□□ -0.6
VRK3-206ENST00000594090 WFDC9Q8NEX5 89 aa11.33□□□□□ -0.6
VRK3-206ENST00000594090 TMEM167AQ8TBQ9 72 aa11.33□□□□□ -0.6
VRK3-206ENST00000594090 RAX2Q96IS3 184 aa11.33□□□□□ -0.6
VRK3-206ENST00000594090 TMEM68Q96MH6 324 aa11.33□□□□□ -0.6
VRK3-206ENST00000594090 PHB2Q99623 299 aa11.33□□□□□ -0.6
VRK3-206ENST00000594090 AIFM2Q9BRQ8 373 aa11.33□□□□□ -0.6
VRK3-206ENST00000594090 VSIG4Q9Y279 399 aa11.33□□□□□ -0.6
VRK3-206ENST00000594090 MSGN1A6NI15 193 aa11.32□□□□□ -0.6
VRK3-206ENST00000594090 APELAP0DMC3 54 aa11.32□□□□□ -0.6
VRK3-206ENST00000594090 PGAM2P15259 253 aa11.32□□□□□ -0.6
VRK3-206ENST00000594090 NQO2P16083 231 aa11.32□□□□□ -0.6
VRK3-206ENST00000594090 F2RP25116 425 aa11.32□□□□□ -0.6
VRK3-206ENST00000594090 CD40LGP29965 261 aa11.32□□□□□ -0.6
VRK3-206ENST00000594090 OR4A47Q6IF82 309 aa11.32□□□□□ -0.6
VRK3-206ENST00000594090 DGCR14Q96DF8 476 aaKnown RBP11.32□□□□□ -0.6
VRK3-206ENST00000594090 SLA2Q9H6Q3 261 aa11.32□□□□□ -0.6
VRK3-206ENST00000594090 SLC2A9Q9NRM0 540 aa11.32□□□□□ -0.6
VRK3-206ENST00000594090 BET1LQ9NYM9 111 aa11.32□□□□□ -0.6
VRK3-206ENST00000594090 COMMD9Q9P000 198 aa11.32□□□□□ -0.6
VRK3-206ENST00000594090 H3BUA1 57 aa11.31□□□□□ -0.6
VRK3-206ENST00000594090 I3L521 148 aa11.31□□□□□ -0.6
VRK3-206ENST00000594090 ZNF735P0CB33 412 aa11.31□□□□□ -0.6
VRK3-206ENST00000594090 S100A5P33763 92 aa11.31□□□□□ -0.6
VRK3-206ENST00000594090 MAS1LP35410 378 aa11.31□□□□□ -0.6
VRK3-206ENST00000594090 PPP5CP53041 499 aa11.31□□□□□ -0.6
VRK3-206ENST00000594090 TPPP2P59282 170 aa11.31□□□□□ -0.6
VRK3-206ENST00000594090 MEF2DQ14814 521 aa11.31□□□□□ -0.6
VRK3-206ENST00000594090 OXLD1Q5BKU9 147 aa11.31□□□□□ -0.6
VRK3-206ENST00000594090 FAAP20Q6NZ36 180 aa11.31□□□□□ -0.6
VRK3-206ENST00000594090 TBC1D26Q86UD7 250 aa11.31□□□□□ -0.6
VRK3-206ENST00000594090 OR5T1Q8NG75 326 aa11.31□□□□□ -0.6
VRK3-206ENST00000594090 OR4A5Q8NH83 315 aa11.31□□□□□ -0.6
VRK3-206ENST00000594090 MS4A10Q96PG2 267 aa11.31□□□□□ -0.6
VRK3-206ENST00000594090 SPIN2AQ99865 258 aa11.31□□□□□ -0.6
VRK3-206ENST00000594090 SPIN2BQ9BPZ2 258 aa11.31□□□□□ -0.6
VRK3-206ENST00000594090 V9GYH0 126 aa11.31□□□□□ -0.6
VRK3-206ENST00000594090 ANKRD20A5PA0PJZ0 165 aa11.3□□□□□ -0.6
VRK3-206ENST00000594090 TRGV3P03979 118 aa11.3□□□□□ -0.6
VRK3-206ENST00000594090 AKAIN1P0CW23 69 aa11.3□□□□□ -0.6
VRK3-206ENST00000594090 ERVK-16P61578 105 aa11.3□□□□□ -0.6
VRK3-206ENST00000594090 RPL8P62917 257 aaKnown RBP11.3□□□□□ -0.6
VRK3-206ENST00000594090 RUNX1Q01196 453 aa11.3□□□□□ -0.6
VRK3-206ENST00000594090 FHL3Q13643 280 aa11.3□□□□□ -0.6
VRK3-206ENST00000594090 SCGB2B2Q4G0G5 96 aa11.3□□□□□ -0.6
VRK3-206ENST00000594090 ZNF585BQ52M93 769 aa11.3□□□□□ -0.6
VRK3-206ENST00000594090 DMBX1Q8NFW5 382 aa11.3□□□□□ -0.6
VRK3-206ENST00000594090 OR4C16Q8NGL9 310 aa11.3□□□□□ -0.6
VRK3-206ENST00000594090 TERB2Q8NHR7 220 aa11.3□□□□□ -0.6
VRK3-206ENST00000594090 ZNF486Q96H40 463 aaPredicted RBP11.3□□□□□ -0.6
VRK3-206ENST00000594090 RCC1LQ96I51 464 aaKnown RBP11.3□□□□□ -0.6
VRK3-206ENST00000594090 OR5B12Q96R08 314 aa11.3□□□□□ -0.6
VRK3-206ENST00000594090 HRASLSQ9HDD0 168 aa11.3□□□□□ -0.6
VRK3-206ENST00000594090 ZNF355PQ9NSJ1 428 aa11.3□□□□□ -0.6
VRK3-206ENST00000594090 FAM212BQ9NTI7 297 aaPredicted RBP11.3□□□□□ -0.6
VRK3-206ENST00000594090 TMEM140Q9NV12 185 aa11.3□□□□□ -0.6
VRK3-206ENST00000594090 DPPA5A6NC42 116 aa11.29□□□□□ -0.6
VRK3-206ENST00000594090 MARCH11A6NNE9 402 aa11.29□□□□□ -0.6
VRK3-206ENST00000594090 TEX22C9J3V5 150 aa11.29□□□□□ -0.6
VRK3-206ENST00000594090 MPPED1O15442 326 aa11.29□□□□□ -0.6
VRK3-206ENST00000594090 IL6RP08887 468 aaPredicted RBP11.29□□□□□ -0.6
VRK3-206ENST00000594090 OR9G9P0C7N8 305 aa11.29□□□□□ -0.6
VRK3-206ENST00000594090 IGLL1P15814 213 aa11.29□□□□□ -0.6
VRK3-206ENST00000594090 PI3P19957 117 aa11.29□□□□□ -0.6
VRK3-206ENST00000594090 LPAR6P43657 344 aa11.29□□□□□ -0.6
VRK3-206ENST00000594090 RPL27AP46776 148 aaKnown RBP11.29□□□□□ -0.6
VRK3-206ENST00000594090 RND3P61587 244 aa11.29□□□□□ -0.6
VRK3-206ENST00000594090 DEFA6Q01524 100 aa11.29□□□□□ -0.6
VRK3-206ENST00000594090 ZNF79Q15937 498 aa11.29□□□□□ -0.6
VRK3-206ENST00000594090 BEAN1Q3B7T3 259 aa11.29□□□□□ -0.6
VRK3-206ENST00000594090 FOXB2Q5VYV0 432 aa11.29□□□□□ -0.6
VRK3-206ENST00000594090 ADAD2Q8NCV1 583 aaKnown RBP11.29□□□□□ -0.6
VRK3-206ENST00000594090 OR11H1Q8NG94 326 aa11.29□□□□□ -0.6
VRK3-206ENST00000594090 MRGPRFQ96AM1 343 aa11.29□□□□□ -0.6
VRK3-206ENST00000594090 COA4Q9NYJ1 87 aa11.29□□□□□ -0.6
VRK3-206ENST00000594090 NDUFA13Q9P0J0 144 aa11.29□□□□□ -0.6
VRK3-206ENST00000594090 TNCP24821 2201 aa11.28□□□□□ -0.6
VRK3-206ENST00000594090 TRAV3A0A0B4J244 114 aa11.28□□□□□ -0.6
VRK3-206ENST00000594090 A0A1B0GW64 132 aa11.28□□□□□ -0.6
VRK3-206ENST00000594090 DISC1C4P0D8 188 aa11.28□□□□□ -0.6
VRK3-206ENST00000594090 E7EUB6 86 aa11.28□□□□□ -0.6
VRK3-206ENST00000594090 UPK2O00526 184 aa11.28□□□□□ -0.6
VRK3-206ENST00000594090 BRI3O95415 125 aa11.28□□□□□ -0.6
VRK3-206ENST00000594090 DUS4LO95620 317 aaKnown RBP11.28□□□□□ -0.6
VRK3-206ENST00000594090 LGALS1P09382 135 aaKnown RBP11.28□□□□□ -0.6
VRK3-206ENST00000594090 MYOD1P15172 320 aa11.28□□□□□ -0.6
VRK3-206ENST00000594090 RPA2P15927 270 aa11.28□□□□□ -0.6
VRK3-206ENST00000594090 HLA-GP17693 338 aa11.28□□□□□ -0.6
VRK3-206ENST00000594090 PIGPP57054 158 aa11.28□□□□□ -0.6
VRK3-206ENST00000594090 RAB25P57735 213 aa11.28□□□□□ -0.6
VRK3-206ENST00000594090 KPRPQ5T749 579 aaPredicted RBP11.28□□□□□ -0.6
VRK3-206ENST00000594090 CCDC190Q86UF4 302 aa11.28□□□□□ -0.6
VRK3-206ENST00000594090 OR13C8Q8NGS7 320 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms