RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 VSTM2AQ8TAG5 236 aa12.15□□□□□ -0.46
LIG3-215ENST00000592690 BORCS5Q969J3 196 aa12.15□□□□□ -0.46
LIG3-215ENST00000592690 TINAGL1Q9GZM7 467 aaPredicted RBP12.15□□□□□ -0.46
LIG3-215ENST00000592690 COA4Q9NYJ1 87 aa12.15□□□□□ -0.46
LIG3-215ENST00000592690 MTFP1Q9UDX5 166 aa12.15□□□□□ -0.46
LIG3-215ENST00000592690 CEPT1Q9Y6K0 416 aa12.15□□□□□ -0.46
LIG3-215ENST00000592690 GPR31O00270 319 aa12.14□□□□□ -0.47
LIG3-215ENST00000592690 PGLYRP1O75594 196 aaPredicted RBP12.14□□□□□ -0.47
LIG3-215ENST00000592690 ACTL6BO94805 426 aa12.14□□□□□ -0.47
LIG3-215ENST00000592690 TPPPO94811 219 aa12.14□□□□□ -0.47
LIG3-215ENST00000592690 S1PR2O95136 353 aa12.14□□□□□ -0.47
LIG3-215ENST00000592690 HPRT1P00492 218 aa12.14□□□□□ -0.47
LIG3-215ENST00000592690 OR8U8P0C7N1 319 aa12.14□□□□□ -0.47
LIG3-215ENST00000592690 MYOD1P15172 320 aa12.14□□□□□ -0.47
LIG3-215ENST00000592690 DGCR2P98153 550 aa12.14□□□□□ -0.47
LIG3-215ENST00000592690 VAX1Q5SQQ9 334 aa12.14□□□□□ -0.47
LIG3-215ENST00000592690 OR4A47Q6IF82 309 aa12.14□□□□□ -0.47
LIG3-215ENST00000592690 REC114Q7Z4M0 266 aa12.14□□□□□ -0.47
LIG3-215ENST00000592690 ADAD2Q8NCV1 583 aaKnown RBP12.14□□□□□ -0.47
LIG3-215ENST00000592690 SLIRPQ9GZT3 109 aaKnown RBP12.14□□□□□ -0.47
LIG3-215ENST00000592690 TGP01266 2768 aa12.13□□□□□ -0.47
LIG3-215ENST00000592690 A0A1B0GW64 132 aa12.13□□□□□ -0.47
LIG3-215ENST00000592690 E7EUB6 86 aa12.13□□□□□ -0.47
LIG3-215ENST00000592690 MPPED1O15442 326 aa12.13□□□□□ -0.47
LIG3-215ENST00000592690 RBMXL2O75526 392 aaKnown RBP12.13□□□□□ -0.47
LIG3-215ENST00000592690 CD3DP04234 171 aa12.13□□□□□ -0.47
LIG3-215ENST00000592690 OR9G9P0C7N8 305 aa12.13□□□□□ -0.47
LIG3-215ENST00000592690 SLURP1P55000 103 aa12.13□□□□□ -0.47
LIG3-215ENST00000592690 TAS2R31P59538 309 aa12.13□□□□□ -0.47
LIG3-215ENST00000592690 EGFEM1PQ0D2K5 195 aa12.13□□□□□ -0.47
LIG3-215ENST00000592690 PHLDA2Q53GA4 152 aa12.13□□□□□ -0.47
LIG3-215ENST00000592690 C15orf40Q8WUR7 153 aa12.13□□□□□ -0.47
LIG3-215ENST00000592690 FCAMRQ8WWV6 532 aa12.13□□□□□ -0.47
LIG3-215ENST00000592690 DPF1Q92782 380 aa12.13□□□□□ -0.47
LIG3-215ENST00000592690 SPIN2AQ99865 258 aa12.13□□□□□ -0.47
LIG3-215ENST00000592690 SPIN2BQ9BPZ2 258 aa12.13□□□□□ -0.47
LIG3-215ENST00000592690 GPR61Q9BZJ8 451 aa12.13□□□□□ -0.47
LIG3-215ENST00000592690 C6orf62Q9GZU0 229 aaPredicted RBP12.13□□□□□ -0.47
LIG3-215ENST00000592690 BET1LQ9NYM9 111 aa12.13□□□□□ -0.47
LIG3-215ENST00000592690 TRAV3A0A0B4J244 114 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 HMX3A6NHT5 357 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 SEC14L6B5MCN3 397 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 TEX22C9J3V5 150 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 LINC01619G3V211 115 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 GABARAPH6UMI1 98 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 BRI3O95415 125 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 PRH1P02810 166 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 IL6RP08887 468 aaPredicted RBP12.12□□□□□ -0.47
LIG3-215ENST00000592690 RPA2P15927 270 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 NQO2P16083 231 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 F2RP25116 425 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 MAS1LP35410 378 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 RPL27AP46776 148 aaKnown RBP12.12□□□□□ -0.47
LIG3-215ENST00000592690 RPL8P62917 257 aaKnown RBP12.12□□□□□ -0.47
LIG3-215ENST00000592690 POU2AF1Q16633 256 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 RNASE10Q5GAN6 216 aaKnown RBP12.12□□□□□ -0.47
LIG3-215ENST00000592690 CMTM1Q8IZ96 169 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 OR4D10Q8NGI6 311 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 CD300LFQ8TDQ1 290 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 DCUN1D4Q92564 292 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 DIRAS2Q96HU8 199 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 FYTTD1Q96QD9 318 aaKnown RBP12.12□□□□□ -0.47
LIG3-215ENST00000592690 RSRP1Q9BUV0 290 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 PLEKHA2Q9HB19 425 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 HRASLSQ9HDD0 168 aa12.12□□□□□ -0.47
LIG3-215ENST00000592690 C13orf42A0A1B0GVH6 325 aa12.11□□□□□ -0.47
LIG3-215ENST00000592690 ZNF735P0CB33 412 aa12.11□□□□□ -0.47
LIG3-215ENST00000592690 LPAR6P43657 344 aa12.11□□□□□ -0.47
LIG3-215ENST00000592690 UCP3P55916 312 aa12.11□□□□□ -0.47
LIG3-215ENST00000592690 ZNF45Q02386 682 aa12.11□□□□□ -0.47
LIG3-215ENST00000592690 IL18Q14116 193 aa12.11□□□□□ -0.47
LIG3-215ENST00000592690 C19orf35Q6ZS72 473 aa12.11□□□□□ -0.47
LIG3-215ENST00000592690 LHFPL1Q86WI0 220 aa12.11□□□□□ -0.47
LIG3-215ENST00000592690 DMBX1Q8NFW5 382 aa12.11□□□□□ -0.47
LIG3-215ENST00000592690 OR4A5Q8NH83 315 aa12.11□□□□□ -0.47
LIG3-215ENST00000592690 MRAPQ8TCY5 172 aa12.11□□□□□ -0.47
LIG3-215ENST00000592690 DLX4Q92988 240 aaPredicted RBP12.11□□□□□ -0.47
LIG3-215ENST00000592690 DGCR14Q96DF8 476 aaKnown RBP12.11□□□□□ -0.47
LIG3-215ENST00000592690 TMEM140Q9NV12 185 aa12.11□□□□□ -0.47
LIG3-215ENST00000592690 COMMD9Q9P000 198 aa12.11□□□□□ -0.47
LIG3-215ENST00000592690 A0A0G2JLM5 398 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 ANKRD34BA5PLL1 514 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 CCDC160A6NGH7 325 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 CGB1A6NKQ9 187 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 K7EIL1 84 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 UPK2O00526 184 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 CD74P04233 296 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 HSPB1P04792 205 aaKnown RBP12.1□□□□□ -0.47
LIG3-215ENST00000592690 IFNA6P05013 189 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 HLA-GP17693 338 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 TBPP20226 339 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 TAS2R19P59542 299 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 ZNF585BQ52M93 769 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 C9orf66Q5T8R8 295 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 TBC1D26Q86UD7 250 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 SLC38A6Q8IZM9 456 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 ARRDC1Q8N5I2 433 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 TTC9CQ8N5M4 171 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 TMEM229BQ8NBD8 167 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 MCFD2Q8NI22 146 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms