RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 LIPFP07098 398 aa11.56□□□□□ -0.56
LIG3-205ENST00000585941 SNCAP37840 140 aa11.56□□□□□ -0.56
LIG3-205ENST00000585941 VDAC2P45880 294 aaPredicted RBP11.56□□□□□ -0.56
LIG3-205ENST00000585941 VWC2Q2TAL6 325 aa11.56□□□□□ -0.56
LIG3-205ENST00000585941 CENPVQ7Z7K6 275 aaPredicted RBP11.56□□□□□ -0.56
LIG3-205ENST00000585941 TGIF2LXQ8IUE1 241 aa11.56□□□□□ -0.56
LIG3-205ENST00000585941 LY6G5BQ8NDX9 201 aa11.56□□□□□ -0.56
LIG3-205ENST00000585941 OR4C13Q8NGP0 309 aa11.56□□□□□ -0.56
LIG3-205ENST00000585941 OR4A5Q8NH83 315 aa11.56□□□□□ -0.56
LIG3-205ENST00000585941 VSTM2AQ8TAG5 236 aa11.56□□□□□ -0.56
LIG3-205ENST00000585941 TAF15Q92804 592 aaKnown RBP eCLIP11.56□□□□□ -0.56
LIG3-205ENST00000585941 LHX4Q969G2 390 aa11.56□□□□□ -0.56
LIG3-205ENST00000585941 NABP2Q9BQ15 211 aa11.56□□□□□ -0.56
LIG3-205ENST00000585941 PBDC1Q9BVG4 233 aa11.56□□□□□ -0.56
LIG3-205ENST00000585941 GGACTQ9BVM4 153 aa11.56□□□□□ -0.56
LIG3-205ENST00000585941 PATZ1Q9HBE1 687 aaKnown RBP11.56□□□□□ -0.56
LIG3-205ENST00000585941 ENY2Q9NPA8 101 aa11.56□□□□□ -0.56
LIG3-205ENST00000585941 WASHC3Q9Y3C0 194 aa11.56□□□□□ -0.56
LIG3-205ENST00000585941 A6NNC1 897 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 C15orf62A8K5M9 175 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 RNASEK-C17orf49H0YIS7 233 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 C1QL1O75973 258 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 F12P00748 615 aaPredicted RBP11.55□□□□□ -0.56
LIG3-205ENST00000585941 IFNA10P01566 189 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 CD5P06127 495 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 HOXA1P49639 335 aaPredicted RBP11.55□□□□□ -0.56
LIG3-205ENST00000585941 ATP5IP56385 69 aaPredicted RBP11.55□□□□□ -0.56
LIG3-205ENST00000585941 RAB11AP62491 216 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 PEA15Q15121 130 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 BEND2Q8NDZ0 799 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 FLYWCH2Q96CP2 140 aaKnown RBP11.55□□□□□ -0.56
LIG3-205ENST00000585941 CLEC7AQ9BXN2 247 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 SMDT1Q9H4I9 107 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 UBTD1Q9HAC8 227 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 ZNRD1Q9P1U0 126 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 AMMECR1Q9Y4X0 333 aaPredicted RBP11.55□□□□□ -0.56
LIG3-205ENST00000585941 TET2Q6N021 2002 aaPredicted RBP11.55□□□□□ -0.56
LIG3-205ENST00000585941 IGHV2-26A0A0B4J1V2 119 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 TRAV3A0A0B4J244 114 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 UBE2L5PA0A1B0GUS4 154 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 A0A1B0GW64 132 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 SOX15O60248 233 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 KBTBD11O94819 623 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 APOC3P02656 99 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 IGKV1-16P04430 117 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 H2AFB1P0C5Y9 115 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 FHITP49789 147 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 C10orf91Q5T1B1 145 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 OR5B3Q8NH48 314 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 HARBI1Q96MB7 349 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 SEC11CQ9BY50 192 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 FBXO7Q9Y3I1 522 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 OR51B2Q9Y5P1 312 aa11.55□□□□□ -0.56
LIG3-205ENST00000585941 TRAV1-1A0A0B4J248 108 aa11.54□□□□□ -0.56
LIG3-205ENST00000585941 A0A1W2PPR1 153 aa11.54□□□□□ -0.56
LIG3-205ENST00000585941 IGLV1-47P01700 117 aa11.54□□□□□ -0.56
LIG3-205ENST00000585941 USF1P22415 310 aaPredicted RBP11.54□□□□□ -0.56
LIG3-205ENST00000585941 EFNA4P52798 201 aa11.54□□□□□ -0.56
LIG3-205ENST00000585941 SPINK9Q5DT21 86 aa11.54□□□□□ -0.56
LIG3-205ENST00000585941 CARHSP1Q9Y2V2 147 aaKnown RBP11.54□□□□□ -0.56
LIG3-205ENST00000585941 C17orf112F2Z3M2 114 aa11.53□□□□□ -0.56
LIG3-205ENST00000585941 C19orf84I3L1E1 186 aa11.53□□□□□ -0.56
LIG3-205ENST00000585941 M0R1W7 72 aa11.53□□□□□ -0.56
LIG3-205ENST00000585941 AGPAT2O15120 278 aa11.53□□□□□ -0.56
LIG3-205ENST00000585941 MPDU1O75352 247 aa11.53□□□□□ -0.56
LIG3-205ENST00000585941 LY6HO94772 140 aa11.53□□□□□ -0.56
LIG3-205ENST00000585941 MBP02144 154 aa11.53□□□□□ -0.56
LIG3-205ENST00000585941 SAA1P0DJI8 122 aaPredicted RBP11.53□□□□□ -0.56
LIG3-205ENST00000585941 M6PRP20645 277 aa11.53□□□□□ -0.56
LIG3-205ENST00000585941 GPR6P46095 362 aaPredicted RBP11.53□□□□□ -0.56
LIG3-205ENST00000585941 PRCDQ00LT1 54 aa11.53□□□□□ -0.56
LIG3-205ENST00000585941 AKR1C1Q04828 323 aa11.53□□□□□ -0.56
LIG3-205ENST00000585941 GUK1Q16774 197 aa11.53□□□□□ -0.56
LIG3-205ENST00000585941 HLA-DRB5Q30154 266 aa11.53□□□□□ -0.56
LIG3-205ENST00000585941 SVBPQ8N300 66 aa11.53□□□□□ -0.56
LIG3-205ENST00000585941 ZNF709Q8N972 641 aa11.53□□□□□ -0.56
LIG3-205ENST00000585941 RBMXL1Q96E39 390 aaKnown RBP11.53□□□□□ -0.56
LIG3-205ENST00000585941 RSG1Q9BU20 258 aa11.53□□□□□ -0.56
LIG3-205ENST00000585941 SSBP3Q9BWW4 388 aaPredicted RBP11.53□□□□□ -0.56
LIG3-205ENST00000585941 NARFLQ9H6Q4 476 aa11.53□□□□□ -0.56
LIG3-205ENST00000585941 IGSF10Q6WRI0 2623 aa11.53□□□□□ -0.56
LIG3-205ENST00000585941 HRNRQ86YZ3 2850 aaPredicted RBP11.52□□□□□ -0.56
LIG3-205ENST00000585941 SRRM4A7MD48 611 aaKnown RBP11.52□□□□□ -0.56
LIG3-205ENST00000585941 F8W036 122 aa11.52□□□□□ -0.56
LIG3-205ENST00000585941 LGALS7P47929 136 aa11.52□□□□□ -0.56
LIG3-205ENST00000585941 DLK1P80370 383 aa11.52□□□□□ -0.56
LIG3-205ENST00000585941 SRSF3P84103 164 aaKnown RBP11.52□□□□□ -0.56
LIG3-205ENST00000585941 TMEM41BQ5BJD5 291 aa11.52□□□□□ -0.56
LIG3-205ENST00000585941 ETV3LQ6ZN32 361 aa11.52□□□□□ -0.56
LIG3-205ENST00000585941 TMEM167AQ8TBQ9 72 aa11.52□□□□□ -0.56
LIG3-205ENST00000585941 MS4A7Q9GZW8 240 aaPredicted RBP11.52□□□□□ -0.56
LIG3-205ENST00000585941 PLEKHA3Q9HB20 300 aa11.52□□□□□ -0.56
LIG3-205ENST00000585941 KIAA1456Q9P272 454 aa11.52□□□□□ -0.56
LIG3-205ENST00000585941 RFNGQ9Y644 331 aa11.52□□□□□ -0.56
LIG3-205ENST00000585941 LOC105371242A0A075B767 164 aa11.52□□□□□ -0.57
LIG3-205ENST00000585941 MDKP21741 143 aaPredicted RBP11.52□□□□□ -0.57
LIG3-205ENST00000585941 FGF7P21781 194 aa11.52□□□□□ -0.57
LIG3-205ENST00000585941 REG1BP48304 166 aa11.52□□□□□ -0.57
LIG3-205ENST00000585941 RPS16P62249 146 aaKnown RBP11.52□□□□□ -0.57
LIG3-205ENST00000585941 DEFA5Q01523 94 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms