RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.3□□□□□ -1.08
SS18-221ENST00000582448 OR8H1Q8NGG4 311 aa8.3□□□□□ -1.08
SS18-221ENST00000582448 OR10C1Q96KK4 312 aa8.3□□□□□ -1.08
SS18-221ENST00000582448 ZNF48Q96MX3 618 aaPredicted RBP8.3□□□□□ -1.08
SS18-221ENST00000582448 ABHD14AQ9BUJ0 271 aa8.3□□□□□ -1.08
SS18-221ENST00000582448 ARL6Q9H0F7 186 aa8.3□□□□□ -1.08
SS18-221ENST00000582448 LINC00574Q9H8X3 128 aa8.3□□□□□ -1.08
SS18-221ENST00000582448 MMP26Q9NRE1 261 aa8.3□□□□□ -1.08
SS18-221ENST00000582448 TNFRSF19Q9NS68 423 aa8.3□□□□□ -1.08
SS18-221ENST00000582448 FAM212BQ9NTI7 297 aaPredicted RBP8.3□□□□□ -1.08
SS18-221ENST00000582448 DUX4Q9UBX2 424 aa8.3□□□□□ -1.08
SS18-221ENST00000582448 TMA7Q9Y2S6 64 aaKnown RBP8.3□□□□□ -1.08
SS18-221ENST00000582448 PRELID3BQ9Y3B1 194 aa8.3□□□□□ -1.08
SS18-221ENST00000582448 AUP1Q9Y679 476 aa8.3□□□□□ -1.08
SS18-221ENST00000582448 WNK2Q9Y3S1 2297 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 TRAV14DV4A0A0A6YYC5 116 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 A0A1B0GU03 582 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 G3V3Q6 166 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 WRBO00258 174 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 TNFRSF13BO14836 293 aaPredicted RBP8.29□□□□□ -1.08
SS18-221ENST00000582448 RAB29O14966 203 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 ST8SIA3O43173 380 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 FOXH1O75593 365 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 IFNA7P01567 189 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 IGHV2-70P01814 119 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 CGB3P0DN86 165 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 CGB7P0DN87 165 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 KIR2DS2P43631 304 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 RAB32Q13637 225 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 NDUFA5Q16718 116 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 Q3ZCU0 254 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 TMUB2Q71RG4 321 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 FOXRED2Q8IWF2 684 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 OR1S1Q8NH92 325 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 ABHD14BQ96IU4 210 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 S1PR3Q99500 378 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 PARP12Q9H0J9 701 aaKnown RBP8.29□□□□□ -1.08
SS18-221ENST00000582448 MBD2Q9UBB5 411 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 RPUSD1Q9UJJ7 312 aaKnown RBP8.29□□□□□ -1.08
SS18-221ENST00000582448 TNFSF18Q9UNG2 199 aa8.29□□□□□ -1.08
SS18-221ENST00000582448 LSM5Q9Y4Y9 91 aaKnown RBP8.29□□□□□ -1.08
SS18-221ENST00000582448 SOX21Q9Y651 276 aaPredicted RBP8.29□□□□□ -1.08
SS18-221ENST00000582448 E5RGE8 158 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 M0R1X1 148 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 SLC25A6P12236 298 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 CXCL2P19875 107 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 LPAR6P43657 344 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 NKX2-1P43699 371 aaPredicted RBP8.28□□□□□ -1.08
SS18-221ENST00000582448 LOXL3P58215 753 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 RAB14P61106 215 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 VAMP2P63027 116 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 KLF17Q5JT82 389 aaPredicted RBP8.28□□□□□ -1.08
SS18-221ENST00000582448 PRAMEF5Q5TYX0 476 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 HEPN1Q6WQI6 88 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 FAM219AQ8IW50 185 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 SPAG16Q8N0X2 631 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 KCNRGQ8N5I3 272 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 KIR3DL3Q8N743 410 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 LSM10Q969L4 123 aaKnown RBP8.28□□□□□ -1.08
SS18-221ENST00000582448 ADTRPQ96IZ2 230 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 PLEKHA2Q9HB19 425 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 C19orf12Q9NSK7 152 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 SDHAF2Q9NX18 166 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 GAB2Q9UQC2 676 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 NSG2Q9Y328 171 aa8.28□□□□□ -1.08
SS18-221ENST00000582448 TGP01266 2768 aa8.27□□□□□ -1.09
SS18-221ENST00000582448 MPTX1A8MV57 137 aa8.27□□□□□ -1.09
SS18-221ENST00000582448 K7EPK0 472 aa8.27□□□□□ -1.09
SS18-221ENST00000582448 DEDDO75618 318 aa8.27□□□□□ -1.09
SS18-221ENST00000582448 IGLV2-14P01704 120 aa8.27□□□□□ -1.09
SS18-221ENST00000582448 LYL1P12980 280 aa8.27□□□□□ -1.09
SS18-221ENST00000582448 IL3RAP26951 378 aa8.27□□□□□ -1.09
SS18-221ENST00000582448 EIF5AP63241 154 aaKnown RBP8.27□□□□□ -1.09
SS18-221ENST00000582448 IL15RAQ13261 267 aa8.27□□□□□ -1.09
SS18-221ENST00000582448 BTNL3Q6UXE8 466 aa8.27□□□□□ -1.09
SS18-221ENST00000582448 SLC51BQ86UW2 128 aa8.27□□□□□ -1.09
SS18-221ENST00000582448 LYG1Q8N1E2 194 aa8.27□□□□□ -1.09
SS18-221ENST00000582448 FAM71E2Q8N5Q1 922 aa8.27□□□□□ -1.09
SS18-221ENST00000582448 LHFPL5Q8TAF8 219 aa8.27□□□□□ -1.09
SS18-221ENST00000582448 AGMATQ9BSE5 352 aa8.27□□□□□ -1.09
SS18-221ENST00000582448 CTSZQ9UBR2 303 aa8.27□□□□□ -1.09
SS18-221ENST00000582448 POMT1Q9Y6A1 747 aa8.27□□□□□ -1.09
SS18-221ENST00000582448 MDFIC2A0A1B0GVS7 189 aa8.26□□□□□ -1.09
SS18-221ENST00000582448 F5H0A9 414 aaPredicted RBP8.26□□□□□ -1.09
SS18-221ENST00000582448 TOR1AO14656 332 aa8.26□□□□□ -1.09
SS18-221ENST00000582448 TAAR5O14804 337 aa8.26□□□□□ -1.09
SS18-221ENST00000582448 RBFOX2O43251 390 aaKnown RBP eCLIP8.26□□□□□ -1.09
SS18-221ENST00000582448 BCL2L11O43521 198 aa8.26□□□□□ -1.09
SS18-221ENST00000582448 MBPP02686 304 aaPredicted RBP8.26□□□□□ -1.09
SS18-221ENST00000582448 CRYBA1P05813 215 aa8.26□□□□□ -1.09
SS18-221ENST00000582448 THBS3P49746 956 aa8.26□□□□□ -1.09
SS18-221ENST00000582448 GNG10P50151 68 aa8.26□□□□□ -1.09
SS18-221ENST00000582448 ERVK-16P61578 105 aa8.26□□□□□ -1.09
SS18-221ENST00000582448 GNB2P62879 340 aa8.26□□□□□ -1.09
SS18-221ENST00000582448 IFITM2Q01629 132 aa8.26□□□□□ -1.09
SS18-221ENST00000582448 ZNF273Q14593 569 aa8.26□□□□□ -1.09
SS18-221ENST00000582448 NMSQ5H8A3 153 aa8.26□□□□□ -1.09
SS18-221ENST00000582448 HIST2H2BDQ6DRA6 164 aa8.26□□□□□ -1.09
SS18-221ENST00000582448 TEX261Q6UWH6 196 aa8.26□□□□□ -1.09
SS18-221ENST00000582448 H2BFWTQ7Z2G1 175 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms