RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 MSGN1A6NI15 193 aa2.47□□□□□ -2.01
SMCHD1-203ENST00000577880 G3V3Q6 166 aa2.47□□□□□ -2.01
SMCHD1-203ENST00000577880 PITX3O75364 302 aa2.47□□□□□ -2.01
SMCHD1-203ENST00000577880 GCGP01275 180 aa2.47□□□□□ -2.01
SMCHD1-203ENST00000577880 CD37P11049 281 aa2.47□□□□□ -2.01
SMCHD1-203ENST00000577880 TDGF1P13385 188 aa2.47□□□□□ -2.01
SMCHD1-203ENST00000577880 MALP21145 153 aa2.47□□□□□ -2.01
SMCHD1-203ENST00000577880 GALP22466 123 aa2.47□□□□□ -2.01
SMCHD1-203ENST00000577880 LEPP41159 167 aa2.47□□□□□ -2.01
SMCHD1-203ENST00000577880 RPS20P60866 119 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-203ENST00000577880 TOR2AQ5JU69 321 aa2.47□□□□□ -2.01
SMCHD1-203ENST00000577880 RMI2Q96E14 147 aa2.47□□□□□ -2.01
SMCHD1-203ENST00000577880 MAP1LC3BQ9GZQ8 125 aa2.47□□□□□ -2.01
SMCHD1-203ENST00000577880 PARP12Q9H0J9 701 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-203ENST00000577880 LINC00527Q9UJ94 153 aa2.47□□□□□ -2.01
SMCHD1-203ENST00000577880 ARL2-SNX15V9GYD0 113 aa2.47□□□□□ -2.01
SMCHD1-203ENST00000577880 OVOL1O14753 267 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 OGG1O15527 345 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 GCM2O75603 506 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 IGHV3-23P01764 117 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 REG1AP05451 166 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 CELA3BP08861 270 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 SCGB1C2P0DMR2 95 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 HKR1P10072 659 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 HLA-DRB5Q30154 266 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 ZNF660Q6AZW8 331 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 ZNF600Q6ZNG1 722 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 IL17RELQ6ZVW7 336 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 PRNTQ86SH4 94 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 OR51G1Q8NGK1 321 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 PTX4Q96A99 478 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 ADAT3Q96EY9 351 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 USMG5Q96IX5 58 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 PRSS27Q9BQR3 290 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 DKK4Q9UBT3 224 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 RPUSD1Q9UJJ7 312 aaKnown RBP2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 LHFPL6Q9Y693 200 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 ARAP2Q8WZ64 1704 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 HEATR5BQ9P2D3 2071 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 PCNTO95613 3336 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 ZNF815PA8K554 130 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 TMEM178BH3BS89 294 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 MFNGO00587 321 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 SIGLEC5O15389 551 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 ZNF324O75467 553 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 CTAG2O75638 210 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 CDS2O95674 445 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 SCTP09683 121 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 PAX1P15863 534 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 PMCHP20382 165 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 PTTG1IPP53801 180 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 PAX8Q06710 450 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 GTF3C1Q12789 2109 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 CTF1Q16619 201 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 TMEM249Q2WGJ8 235 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 SNAI3Q3KNW1 292 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 CGB2Q6NT52 195 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 SIGLECL1Q8N7X8 197 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 OR1N2Q8NGR9 330 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 SUN5Q8TC36 379 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 MYOZ3Q8TDC0 251 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 SMIM4Q8WVI0 70 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 KCNS1Q96KK3 526 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 GPR82Q96P67 336 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 SLC25A32Q9H2D1 315 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 GEMIN7Q9H840 131 aaKnown RBP2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 SLC2A9Q9NRM0 540 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 FRRS1LQ9P0K9 344 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 OPN4Q9UHM6 478 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 SOX21Q9Y651 276 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 PLXNA1Q9UIW2 1896 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 TRAV8-6A0A0B4J262 113 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 IGHV1-69DA0A0B4J2H0 117 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 ASPDHA6ND91 283 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 MPTX1A8MV57 137 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 E7EQL1 145 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 SMLR1H3BR10 107 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 FXYD1O00168 92 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 SCGB1D1O95968 90 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 IGHV1-69P01742 117 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 FAM157CP0CG43 387 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 RNF224P0DH78 156 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 VSIG8P0DPA2 414 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 CD24P25063 80 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 SUMO2P61956 95 aaKnown RBP2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 POLR2GP62487 172 aaKnown RBP eCLIP2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 PMS2P11Q13670 270 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 MIDNQ504T8 468 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 C1QL2Q7Z5L3 287 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 ZNF329Q86UD4 541 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 ASB13Q8WXK3 278 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 GPX7Q96SL4 187 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 KIR2DL4Q99706 377 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 NXF2Q9GZY0 626 aaKnown RBP2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 FAM206AQ9NX38 181 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 HSPB7Q9UBY9 170 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 MTFP1Q9UDX5 166 aa2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 MRPS16Q9Y3D3 137 aaKnown RBP2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 ELOA3CA0A087WX78 387 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-203ENST00000577880 IGHV3-66A0A0C4DH42 116 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms