RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 IGHV3-7P01780 117 aa12.96□□□□□ -0.33
NUP88-207ENST00000573584 VDAC2P45880 294 aaPredicted RBP12.96□□□□□ -0.33
NUP88-207ENST00000573584 ERVK-16P61578 105 aa12.96□□□□□ -0.33
NUP88-207ENST00000573584 Q8TCH9 128 aa12.96□□□□□ -0.33
NUP88-207ENST00000573584 AQP7O14520 342 aa12.96□□□□□ -0.33
NUP88-207ENST00000573584 NUPR1O60356 82 aa12.96□□□□□ -0.33
NUP88-207ENST00000573584 GFRA3O60609 400 aa12.96□□□□□ -0.33
NUP88-207ENST00000573584 MORN2Q502X0 79 aa12.96□□□□□ -0.33
NUP88-207ENST00000573584 TGIF2LXQ8IUE1 241 aa12.96□□□□□ -0.33
NUP88-207ENST00000573584 TMEM178AQ8NBL3 297 aa12.96□□□□□ -0.33
NUP88-207ENST00000573584 OCC1Q8TAD7 63 aa12.96□□□□□ -0.33
NUP88-207ENST00000573584 TRAV3A0A0B4J244 114 aa12.95□□□□□ -0.34
NUP88-207ENST00000573584 LNP1A1A4G5 178 aa12.95□□□□□ -0.34
NUP88-207ENST00000573584 TMPRSS3P57727 454 aa12.95□□□□□ -0.34
NUP88-207ENST00000573584 RPL39P5Q59GN2 51 aa12.95□□□□□ -0.34
NUP88-207ENST00000573584 OR52E5Q8NH55 327 aa12.95□□□□□ -0.34
NUP88-207ENST00000573584 SSMEM1Q8WWF3 244 aa12.95□□□□□ -0.34
NUP88-207ENST00000573584 CLCF1Q9UBD9 225 aa12.95□□□□□ -0.34
NUP88-207ENST00000573584 PRSS46E5RG02 174 aa12.95□□□□□ -0.34
NUP88-207ENST00000573584 TIMP3P35625 211 aa12.95□□□□□ -0.34
NUP88-207ENST00000573584 TRIP6Q15654 476 aaKnown RBP12.95□□□□□ -0.34
NUP88-207ENST00000573584 TEX38Q6PEX7 206 aa12.95□□□□□ -0.34
NUP88-207ENST00000573584 RELBQ01201 579 aa12.95□□□□□ -0.34
NUP88-207ENST00000573584 ZNF718Q3SXZ3 478 aa12.95□□□□□ -0.34
NUP88-207ENST00000573584 OR10G8Q8NGN5 311 aa12.95□□□□□ -0.34
NUP88-207ENST00000573584 MS4A10Q96PG2 267 aa12.95□□□□□ -0.34
NUP88-207ENST00000573584 GPR179Q6PRD1 2367 aa12.95□□□□□ -0.34
NUP88-207ENST00000573584 CECR9P0C854 216 aa12.94□□□□□ -0.34
NUP88-207ENST00000573584 SELLP14151 372 aa12.94□□□□□ -0.34
NUP88-207ENST00000573584 ADMP35318 185 aa12.94□□□□□ -0.34
NUP88-207ENST00000573584 THBS3P49746 956 aa12.94□□□□□ -0.34
NUP88-207ENST00000573584 S1PR3Q99500 378 aa12.94□□□□□ -0.34
NUP88-207ENST00000573584 JPT1Q9UK76 154 aa12.94□□□□□ -0.34
NUP88-207ENST00000573584 YTHDF2Q9Y5A9 579 aaKnown RBP12.94□□□□□ -0.34
NUP88-207ENST00000573584 DSPP15924 2871 aaKnown RBP12.94□□□□□ -0.34
NUP88-207ENST00000573584 ZNF134P52741 427 aa12.94□□□□□ -0.34
NUP88-207ENST00000573584 NPVFQ9HCQ7 196 aa12.94□□□□□ -0.34
NUP88-207ENST00000573584 TMEM140Q9NV12 185 aa12.94□□□□□ -0.34
NUP88-207ENST00000573584 EREGO14944 169 aa12.93□□□□□ -0.34
NUP88-207ENST00000573584 RAB4BP61018 213 aa12.93□□□□□ -0.34
NUP88-207ENST00000573584 YPEL3P61236 119 aaPredicted RBP12.93□□□□□ -0.34
NUP88-207ENST00000573584 DUSP13Q9UII6 198 aa12.93□□□□□ -0.34
NUP88-207ENST00000573584 NAGKQ9UJ70 344 aa12.93□□□□□ -0.34
NUP88-207ENST00000573584 PRR14LQ5THK1 2151 aa12.93□□□□□ -0.34
NUP88-207ENST00000573584 GRIFINA4D1Z8 144 aa12.93□□□□□ -0.34
NUP88-207ENST00000573584 ZNF90Q03938 601 aa12.93□□□□□ -0.34
NUP88-207ENST00000573584 VWA1Q6PCB0 445 aa12.93□□□□□ -0.34
NUP88-207ENST00000573584 DHRS13Q6UX07 377 aa12.93□□□□□ -0.34
NUP88-207ENST00000573584 FAM90A1Q86YD7 464 aa12.93□□□□□ -0.34
NUP88-207ENST00000573584 SEPSECSQ9HD40 501 aaKnown RBP12.93□□□□□ -0.34
NUP88-207ENST00000573584 TCF19Q9Y242 345 aa12.93□□□□□ -0.34
NUP88-207ENST00000573584 IGKV1D-17A0A075B6S4 117 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 YPEL1O60688 119 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 IL6RP08887 468 aaPredicted RBP12.92□□□□□ -0.34
NUP88-207ENST00000573584 GCHFRP30047 84 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 ERVFC1-1P60608 527 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 RPL31P62899 125 aaKnown RBP12.92□□□□□ -0.34
NUP88-207ENST00000573584 C1orf194Q5T5A4 169 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 OR2Z1Q8NG97 314 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 C1orf159Q96HA4 380 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 YPEL2Q96QA6 119 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 POLR3KQ9Y2Y1 108 aaPredicted RBP12.92□□□□□ -0.34
NUP88-207ENST00000573584 LSM4Q9Y4Z0 139 aaKnown RBP12.92□□□□□ -0.34
NUP88-207ENST00000573584 CD59P13987 128 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 OR10J1P30954 320 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 KIR2DL2P43627 348 aaPredicted RBP12.92□□□□□ -0.34
NUP88-207ENST00000573584 CMTM2Q8TAZ6 248 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 CBLN1P23435 193 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 TNFSF10P50591 281 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 LOXL3P58215 753 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 NUTF2P61970 127 aaKnown RBP12.92□□□□□ -0.34
NUP88-207ENST00000573584 EFNB3Q15768 340 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 SPATA31B1PQ5VZV4 182 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 CHODLQ9H9P2 273 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 TUBG2Q9NRH3 451 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 CBLN4Q9NTU7 201 aa12.92□□□□□ -0.34
NUP88-207ENST00000573584 SLC17A3O00476 420 aa12.91□□□□□ -0.34
NUP88-207ENST00000573584 TCAPO15273 167 aa12.91□□□□□ -0.34
NUP88-207ENST00000573584 RHOBP62745 196 aa12.91□□□□□ -0.34
NUP88-207ENST00000573584 GUSBP1Q15486 140 aa12.91□□□□□ -0.34
NUP88-207ENST00000573584 ARSJQ5FYB0 599 aaPredicted RBP12.91□□□□□ -0.34
NUP88-207ENST00000573584 TEPPQ6URK8 271 aa12.91□□□□□ -0.34
NUP88-207ENST00000573584 STPG3Q8N7X2 389 aa12.91□□□□□ -0.34
NUP88-207ENST00000573584 IFI27L2Q9H2X8 130 aa12.91□□□□□ -0.34
NUP88-207ENST00000573584 PTPRBP23467 1997 aa12.91□□□□□ -0.34
NUP88-207ENST00000573584 HCFC1P51610 2035 aa12.91□□□□□ -0.34
NUP88-207ENST00000573584 ZNF705FA8MVS1 300 aaPredicted RBP12.91□□□□□ -0.34
NUP88-207ENST00000573584 MGST3O14880 152 aa12.91□□□□□ -0.34
NUP88-207ENST00000573584 FOXH1O75593 365 aa12.91□□□□□ -0.34
NUP88-207ENST00000573584 ZNF705DP0CH99 300 aaPredicted RBP12.91□□□□□ -0.34
NUP88-207ENST00000573584 ZNF705BP0CI00 300 aaPredicted RBP12.91□□□□□ -0.34
NUP88-207ENST00000573584 COL8A2P25067 703 aa12.91□□□□□ -0.34
NUP88-207ENST00000573584 HLA-DRB5Q30154 266 aa12.91□□□□□ -0.34
NUP88-207ENST00000573584 SNHG12Q9BXW3 62 aa12.91□□□□□ -0.34
NUP88-207ENST00000573584 IGHV3OR15-7A0A075B7D8 119 aa12.9□□□□□ -0.34
NUP88-207ENST00000573584 K7EN84 100 aa12.9□□□□□ -0.34
NUP88-207ENST00000573584 MBNL2Q5VZF2 373 aaKnown RBP12.9□□□□□ -0.34
NUP88-207ENST00000573584 ZNRF1Q8ND25 227 aa12.9□□□□□ -0.34
NUP88-207ENST00000573584 PPP1R35Q8TAP8 253 aa12.9□□□□□ -0.34
NUP88-207ENST00000573584 IL36BQ9NZH7 164 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms