RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ONECUT1Q9UBC0 465 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 STRAPQ9Y3F4 350 aaKnown RBP6.5□□□□□ -1.37
VPS39-213ENST00000570062 INSIG2Q9Y5U4 225 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 FLNCQ14315 2725 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 DYSFO75923 2080 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 HCFC1P51610 2035 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 UMAD1C9J7I0 102 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 H0YJW9 148 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 H7C2Y5 167 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 SHOXO15266 292 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 SLC31A2O15432 143 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 MMP23AO75900 390 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 SPDEFO95238 335 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 CRYZL1O95825 349 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 USF1P22415 310 aaPredicted RBP6.49□□□□□ -1.37
VPS39-213ENST00000570062 MAS1LP35410 378 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 COMPP49747 757 aaPredicted RBP6.49□□□□□ -1.37
VPS39-213ENST00000570062 ATP5J2P56134 94 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 LGALS4P56470 323 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 BRWD1-AS2P59051 145 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 HSPE1P61604 102 aaKnown RBP6.49□□□□□ -1.37
VPS39-213ENST00000570062 RAB11AP62491 216 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 EWSR1Q01844 656 aaKnown RBP eCLIP6.49□□□□□ -1.37
VPS39-213ENST00000570062 OR2B11Q5JQS5 317 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 HSD17B13Q7Z5P4 300 aaPredicted RBP6.49□□□□□ -1.37
VPS39-213ENST00000570062 ZNF383Q8NA42 475 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 TEX45Q8NA69 505 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 DTD1Q8TEA8 209 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 LEAP2Q969E1 77 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 SAT2Q96F10 170 aaPredicted RBP6.49□□□□□ -1.37
VPS39-213ENST00000570062 C5orf30Q96GV9 206 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 GPHA2Q96T91 129 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 NABP2Q9BQ15 211 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 PARD6GQ9BYG4 376 aaPredicted RBP6.49□□□□□ -1.37
VPS39-213ENST00000570062 C11orf1Q9H5F2 150 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 TMEM140Q9NV12 185 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 BEX4Q9NWD9 120 aaPredicted RBP6.49□□□□□ -1.37
VPS39-213ENST00000570062 PFDN2Q9UHV9 154 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 NUP50Q9UKX7 468 aa6.49□□□□□ -1.37
VPS39-213ENST00000570062 FOXA2Q9Y261 457 aaPredicted RBP6.49□□□□□ -1.37
VPS39-213ENST00000570062 TBL2Q9Y4P3 447 aaKnown RBP6.49□□□□□ -1.37
VPS39-213ENST00000570062 IGHV2-70DA0A0C4DH43 119 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 A0A1W2PN81 502 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 MEX3AA1L020 520 aaKnown RBP6.48□□□□□ -1.37
VPS39-213ENST00000570062 LINC00862A6NCI5 91 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 C15orf61A6NNL5 157 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 CEBPZOSA8MTT3 80 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 INS-IGF2F8WCM5 200 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 TRIM77I1YAP6 450 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 FCN3O75636 299 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 KBTBD11O94819 623 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 IGHV4-39P01824 125 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 IL6RP08887 468 aaPredicted RBP6.48□□□□□ -1.37
VPS39-213ENST00000570062 OR8U8P0C7N1 319 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 CD1BP29016 333 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 CHRNA7P36544 502 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 HTR2BP41595 481 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 SUB1P53999 127 aaKnown RBP eCLIP6.48□□□□□ -1.37
VPS39-213ENST00000570062 F2RL1P55085 397 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 BLOC1S1P78537 153 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 Q6ZRM9 215 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 OR10P1Q8NGE3 313 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 TMEM167AQ8TBQ9 72 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 SCGB1C1Q8TD33 95 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 C10orf105Q8TEF2 133 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 BPESC1Q9GZL8 116 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 MS4A7Q9GZW8 240 aaPredicted RBP6.48□□□□□ -1.37
VPS39-213ENST00000570062 ARV1Q9H2C2 271 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 CYTL1Q9NRR1 136 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 FBXL17Q9UF56 701 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 PRR14LQ5THK1 2151 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 PLCE1Q9P212 2302 aa6.48□□□□□ -1.37
VPS39-213ENST00000570062 ADGRG4Q8IZF6 3080 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 PCNX1Q96RV3 2341 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 A0A0G2JRQ6 117 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 A0A1W2PPE3 182 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 FAM24AA6NFZ4 105 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 MSGN1A6NI15 193 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 C22orf46C9J442 243 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 FNDC10F2Z333 226 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 TEX46H3BTG2 121 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 UPK2O00526 184 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 MPDU1O75352 247 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 LY6HO94772 140 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 ACTL6BO94805 426 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 IGHV3-7P01780 117 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 ARG1P05089 322 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 UBE2E1P51965 193 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 DVL1P1P54792 670 aaPredicted RBP6.47□□□□□ -1.37
VPS39-213ENST00000570062 PAX9P55771 341 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 BPIFB3P59826 476 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 RAB2AP61019 212 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 LMO4P61968 165 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 RPS16P62249 146 aaKnown RBP6.47□□□□□ -1.37
VPS39-213ENST00000570062 ARF6P62330 175 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 ERHP84090 104 aaKnown RBP6.47□□□□□ -1.37
VPS39-213ENST00000570062 TPTE2P1Q5T6R2 138 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 OR4A47Q6IF82 309 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 FAM53AQ6NSI3 398 aaPredicted RBP6.47□□□□□ -1.37
VPS39-213ENST00000570062 SLC25A24Q6NUK1 477 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms