RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 FOLR2P14207 255 aa12.73□□□□□ -0.37
CLN3-231ENST00000568422 RPL27AP46776 148 aaKnown RBP12.73□□□□□ -0.37
CLN3-231ENST00000568422 GNG2P59768 71 aa12.73□□□□□ -0.37
CLN3-231ENST00000568422 EIF4EBP1Q13541 118 aaPredicted RBP12.73□□□□□ -0.37
CLN3-231ENST00000568422 UBE2UQ5VVX9 321 aa12.73□□□□□ -0.37
CLN3-231ENST00000568422 ZNF66Q6ZN08 573 aa12.73□□□□□ -0.37
CLN3-231ENST00000568422 GPHB5Q86YW7 130 aa12.73□□□□□ -0.37
CLN3-231ENST00000568422 PUSL1Q8N0Z8 303 aaKnown RBP12.73□□□□□ -0.37
CLN3-231ENST00000568422 TCTEX1D2Q8WW35 142 aa12.73□□□□□ -0.37
CLN3-231ENST00000568422 HIPK2Q9H2X6 1198 aa12.73□□□□□ -0.37
CLN3-231ENST00000568422 GAR1Q9NY12 217 aaKnown RBP12.73□□□□□ -0.37
CLN3-231ENST00000568422 FBXL7Q9UJT9 491 aa12.73□□□□□ -0.37
CLN3-231ENST00000568422 RAB26Q9ULW5 256 aa12.73□□□□□ -0.37
CLN3-231ENST00000568422 DMRT1Q9Y5R6 373 aa12.73□□□□□ -0.37
CLN3-231ENST00000568422 IGKV1D-13A0A0B4J2D9 117 aa12.72□□□□□ -0.37
CLN3-231ENST00000568422 TMEM235A6NFC5 223 aa12.72□□□□□ -0.37
CLN3-231ENST00000568422 HMX3A6NHT5 357 aa12.72□□□□□ -0.37
CLN3-231ENST00000568422 C2orf70A6NJV1 201 aa12.72□□□□□ -0.37
CLN3-231ENST00000568422 CRYGCP07315 174 aa12.72□□□□□ -0.37
CLN3-231ENST00000568422 ZNF735P0CB33 412 aa12.72□□□□□ -0.37
CLN3-231ENST00000568422 IGKV1-13P0DP09 117 aa12.72□□□□□ -0.37
CLN3-231ENST00000568422 HIST1H1BP16401 226 aaKnown RBP12.72□□□□□ -0.37
CLN3-231ENST00000568422 MSMO1Q15800 293 aa12.72□□□□□ -0.37
CLN3-231ENST00000568422 KLK9Q2XQG4 91 aa12.72□□□□□ -0.37
CLN3-231ENST00000568422 VKORC1L1Q8N0U8 176 aa12.72□□□□□ -0.37
CLN3-231ENST00000568422 MFSD4AQ8N468 514 aa12.72□□□□□ -0.37
CLN3-231ENST00000568422 NUDCD2Q8WVJ2 157 aa12.72□□□□□ -0.37
CLN3-231ENST00000568422 TXNL4BQ9NX01 149 aaKnown RBP12.72□□□□□ -0.37
CLN3-231ENST00000568422 KLK9Q9UKQ9 250 aa12.72□□□□□ -0.37
CLN3-231ENST00000568422 SPATA2Q9UM82 520 aa12.72□□□□□ -0.37
CLN3-231ENST00000568422 PPP5D1E7EU14 171 aa12.71□□□□□ -0.37
CLN3-231ENST00000568422 IL6RP08887 468 aaPredicted RBP12.71□□□□□ -0.37
CLN3-231ENST00000568422 SCAND1P57086 179 aa12.71□□□□□ -0.37
CLN3-231ENST00000568422 OR4A5Q8NH83 315 aa12.71□□□□□ -0.37
CLN3-231ENST00000568422 FCGR1BQ92637 280 aa12.71□□□□□ -0.37
CLN3-231ENST00000568422 FYTTD1Q96QD9 318 aaKnown RBP12.71□□□□□ -0.37
CLN3-231ENST00000568422 DAPK2Q9UIK4 370 aa12.71□□□□□ -0.37
CLN3-231ENST00000568422 SMIM30A4D0T7 59 aa12.7□□□□□ -0.38
CLN3-231ENST00000568422 OR11H12B2RN74 326 aa12.7□□□□□ -0.38
CLN3-231ENST00000568422 OR2C1O95371 312 aa12.7□□□□□ -0.38
CLN3-231ENST00000568422 CD7P09564 240 aa12.7□□□□□ -0.38
CLN3-231ENST00000568422 CBLN1P23435 193 aa12.7□□□□□ -0.38
CLN3-231ENST00000568422 PSMB6P28072 239 aa12.7□□□□□ -0.38
CLN3-231ENST00000568422 ARL3P36405 182 aa12.7□□□□□ -0.38
CLN3-231ENST00000568422 BRWD1-AS2P59051 145 aa12.7□□□□□ -0.38
CLN3-231ENST00000568422 RPL8P62917 257 aaKnown RBP12.7□□□□□ -0.38
CLN3-231ENST00000568422 GUCA2BQ16661 112 aa12.7□□□□□ -0.38
CLN3-231ENST00000568422 FAM106AQ4KMX7 169 aa12.7□□□□□ -0.38
CLN3-231ENST00000568422 SLC16A13Q7RTY0 426 aa12.7□□□□□ -0.38
CLN3-231ENST00000568422 EEF1AKMT3Q96AZ1 226 aa12.7□□□□□ -0.38
CLN3-231ENST00000568422 TAS2R8Q9NYW2 309 aa12.7□□□□□ -0.38
CLN3-231ENST00000568422 SSR3Q9UNL2 185 aa12.7□□□□□ -0.38
CLN3-231ENST00000568422 DNAH1Q9P2D7 4330 aa12.7□□□□□ -0.38
CLN3-231ENST00000568422 E7EUB6 86 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 SSX5O60225 188 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 JTBO76095 146 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 HLA-AP01891 365 aaKnown RBP12.69□□□□□ -0.38
CLN3-231ENST00000568422 CTRB1P17538 263 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 HLA-GP17693 338 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 PSMB9P28065 219 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 ARPC4P59998 168 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 CTRB2Q6GPI1 263 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 OR4A47Q6IF82 309 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 SFXN4Q6P4A7 337 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 CLEC19AQ6UXS0 136 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 SPARTQ8N0X7 666 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 DEFB125Q8N687 156 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 ZBTB34Q8NCN2 500 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 CXorf58Q96LI9 332 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 CCDC140Q96MF4 163 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 FANCD2OSQ96PS1 177 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 SRD5A3Q9H8P0 318 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 RHBDL2Q9NX52 303 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 BET1LQ9NYM9 111 aa12.69□□□□□ -0.38
CLN3-231ENST00000568422 RRP15Q9Y3B9 282 aaKnown RBP12.69□□□□□ -0.38
CLN3-231ENST00000568422 A0A0A6YYH2 397 aa12.68□□□□□ -0.38
CLN3-231ENST00000568422 TRBV7-1A0A0A6YYK4 115 aa12.68□□□□□ -0.38
CLN3-231ENST00000568422 RBMY1BA6NDE4 496 aaKnown RBP12.68□□□□□ -0.38
CLN3-231ENST00000568422 RBMY1EA6NEQ0 496 aaKnown RBP12.68□□□□□ -0.38
CLN3-231ENST00000568422 A6NJ64 397 aa12.68□□□□□ -0.38
CLN3-231ENST00000568422 A8MWP6 167 aa12.68□□□□□ -0.38
CLN3-231ENST00000568422 RBFOX2O43251 390 aaKnown RBP eCLIP12.68□□□□□ -0.38
CLN3-231ENST00000568422 NDUFB8O95169 186 aa12.68□□□□□ -0.38
CLN3-231ENST00000568422 RBMY1DP0C7P1 496 aaKnown RBP12.68□□□□□ -0.38
CLN3-231ENST00000568422 DEFA4P12838 97 aa12.68□□□□□ -0.38
CLN3-231ENST00000568422 AREGP15514 252 aa12.68□□□□□ -0.38
CLN3-231ENST00000568422 ZNF57Q68EA5 555 aaPredicted RBP12.68□□□□□ -0.38
CLN3-231ENST00000568422 BEST4Q8NFU0 473 aa12.68□□□□□ -0.38
CLN3-231ENST00000568422 LGALS14Q8TCE9 139 aa12.68□□□□□ -0.38
CLN3-231ENST00000568422 WDR89Q96FK6 387 aaPredicted RBP12.68□□□□□ -0.38
CLN3-231ENST00000568422 RETNQ9HD89 108 aa12.68□□□□□ -0.38
CLN3-231ENST00000568422 ETV7Q9Y603 341 aa12.68□□□□□ -0.38
CLN3-231ENST00000568422 EPPK1P58107 5090 aaKnown RBP12.67□□□□□ -0.38
CLN3-231ENST00000568422 A0A1B0GW64 132 aa12.67□□□□□ -0.38
CLN3-231ENST00000568422 ZNF320A2RRD8 509 aa12.67□□□□□ -0.38
CLN3-231ENST00000568422 FGF2P09038 288 aa12.67□□□□□ -0.38
CLN3-231ENST00000568422 FCGR2CP31995 323 aa12.67□□□□□ -0.38
CLN3-231ENST00000568422 ANKRD55Q3KP44 614 aa12.67□□□□□ -0.38
CLN3-231ENST00000568422 SSX9Q7RTT3 188 aa12.67□□□□□ -0.38
CLN3-231ENST00000568422 SPAG16Q8N0X2 631 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms