RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 CCDC190Q86UF4 302 aa7.63□□□□□ -1.19
CLK3-220ENST00000567992 ZNF695Q8IW36 515 aa7.63□□□□□ -1.19
CLK3-220ENST00000567992 TCTEX1D1Q8N7M0 179 aa7.63□□□□□ -1.19
CLK3-220ENST00000567992 KLHL30-AS1Q8NEE0 82 aa7.63□□□□□ -1.19
CLK3-220ENST00000567992 TMEM167AQ8TBQ9 72 aa7.63□□□□□ -1.19
CLK3-220ENST00000567992 ABHD5Q8WTS1 349 aa7.63□□□□□ -1.19
CLK3-220ENST00000567992 CASTOR1Q8WTX7 329 aa7.63□□□□□ -1.19
CLK3-220ENST00000567992 TRIM63Q969Q1 353 aa7.63□□□□□ -1.19
CLK3-220ENST00000567992 GNB4Q9HAV0 340 aa7.63□□□□□ -1.19
CLK3-220ENST00000567992 FOXA2Q9Y261 457 aaPredicted RBP7.63□□□□□ -1.19
CLK3-220ENST00000567992 NOTCH3Q9UM47 2321 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 A0A1B0GW64 132 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 ANKRD20A5PA0PJZ0 165 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 FABP12A6NFH5 140 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 UPK1BO75841 260 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 OR2A4O95047 310 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 RAB3DO95716 219 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 HPRT1P00492 218 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 HNRNPCP07910 306 aaKnown RBP eCLIP7.62□□□□□ -1.19
CLK3-220ENST00000567992 F2RP25116 425 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 SLC6A1P30531 599 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 RAB9AP51151 201 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 TAS2R31P59538 309 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 IFITM3Q01628 133 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 TNXAQ16473 311 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 DEFB136Q30KP8 78 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 ZNF585BQ52M93 769 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 OR4A47Q6IF82 309 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 STEAP1BQ6NZ63 245 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 UNQ5815/PRO19632Q6UWF5 114 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 MMD2Q8IY49 270 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 CMTM1Q8IZ96 169 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 SLC38A6Q8IZM9 456 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 LINC00482Q8N8I6 264 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 ZNF491Q8N8L2 437 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 WFDC9Q8NEX5 89 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 OR4C16Q8NGL9 310 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 OR5M8Q8NGP6 311 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 SRSF12Q8WXF0 261 aaKnown RBP7.62□□□□□ -1.19
CLK3-220ENST00000567992 RAX2Q96IS3 184 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 RHOVQ96L33 236 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 OR2A7Q96R45 310 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 P2RX4Q99571 388 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 PLEKHA2Q9HB19 425 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 SLC2A9Q9NRM0 540 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 BET1LQ9NYM9 111 aa7.62□□□□□ -1.19
CLK3-220ENST00000567992 TRAV3A0A0B4J244 114 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 NUDT19A8MXV4 375 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 TEX22C9J3V5 150 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 E7EUB6 86 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 CNIH1O95406 144 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 BRI3O95415 125 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 HRASP01112 189 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 IFNA6P05013 189 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 APELAP0DMC3 54 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 MYOD1P15172 320 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 PI3P19957 117 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 S100A5P33763 92 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 RND3P61587 244 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 TMEM267Q0VDI3 215 aaPredicted RBP7.61□□□□□ -1.19
CLK3-220ENST00000567992 FHL3Q13643 280 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 MEF2DQ14814 521 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 SAMD5Q5TGI4 173 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 SSX9Q7RTT3 188 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 TBC1D26Q86UD7 250 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 MRPL41Q8IXM3 137 aaKnown RBP7.61□□□□□ -1.19
CLK3-220ENST00000567992 OR13C8Q8NGS7 320 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 VSTM2AQ8TAG5 236 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 CD300LFQ8TDQ1 290 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 C4orf3Q8WVX3 66 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 UBE2E2Q96LR5 201 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 DUX3Q96PT4 197 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 COMMD9Q9P000 198 aa7.61□□□□□ -1.19
CLK3-220ENST00000567992 MSGN1A6NI15 193 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 CGB1A6NKQ9 187 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 G3V4G9 280 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 I3L521 148 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 CREBL2O60519 120 aaPredicted RBP7.6□□□□□ -1.19
CLK3-220ENST00000567992 RBMXL2O75526 392 aaKnown RBP7.6□□□□□ -1.19
CLK3-220ENST00000567992 IGKV1-39P01597 117 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 PF4P02776 101 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 IGKV1D-39P04432 117 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 AKAIN1P0CW23 69 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 NQO2P16083 231 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 MYCNOSP40205 109 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 RUNX1Q01196 453 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 KLF9Q13886 244 aaPredicted RBP7.6□□□□□ -1.19
CLK3-220ENST00000567992 LPCAT3Q6P1A2 487 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 POC5Q8NA72 575 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 ADAD2Q8NCV1 583 aaKnown RBP7.6□□□□□ -1.19
CLK3-220ENST00000567992 OR5T1Q8NG75 326 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 OR4A5Q8NH83 315 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 TERB2Q8NHR7 220 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 ZNF486Q96H40 463 aaPredicted RBP7.6□□□□□ -1.19
CLK3-220ENST00000567992 TMEM68Q96MH6 324 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 THAP7Q9BT49 309 aaPredicted RBP7.6□□□□□ -1.19
CLK3-220ENST00000567992 FAM212BQ9NTI7 297 aaPredicted RBP7.6□□□□□ -1.19
CLK3-220ENST00000567992 TMEM140Q9NV12 185 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 SLC2A8Q9NY64 477 aa7.6□□□□□ -1.19
CLK3-220ENST00000567992 VSIG4Q9Y279 399 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms