RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ACP7Q6ZNF0 438 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 BEND2Q8NDZ0 799 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 MS4A10Q96PG2 267 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 SPRY4Q9C004 299 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 ASCL3Q9NQ33 180 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 POLR3KQ9Y2Y1 108 aaPredicted RBP10.98□□□□□ -0.65
CLN3-210ENST00000563874 SVILO95425 2214 aa10.97□□□□□ -0.65
CLN3-210ENST00000563874 MDFIC2A0A1B0GVS7 189 aa10.97□□□□□ -0.65
CLN3-210ENST00000563874 ZNF705FA8MVS1 300 aaPredicted RBP10.97□□□□□ -0.65
CLN3-210ENST00000563874 ZNF705DP0CH99 300 aaPredicted RBP10.97□□□□□ -0.65
CLN3-210ENST00000563874 ZNF705BP0CI00 300 aaPredicted RBP10.97□□□□□ -0.65
CLN3-210ENST00000563874 LBHQ53QV2 105 aaPredicted RBP10.97□□□□□ -0.65
CLN3-210ENST00000563874 COL25A1Q9BXS0 654 aaPredicted RBP10.97□□□□□ -0.65
CLN3-210ENST00000563874 MS4A5Q9H3V2 200 aa10.97□□□□□ -0.65
CLN3-210ENST00000563874 ELOVL5Q9NYP7 299 aa10.97□□□□□ -0.65
CLN3-210ENST00000563874 CUL9Q8IWT3 2517 aa10.97□□□□□ -0.65
CLN3-210ENST00000563874 CFAP47Q6ZTR5 3102 aa10.97□□□□□ -0.65
CLN3-210ENST00000563874 KLRC4-KLRK1H3BQV0 150 aa10.97□□□□□ -0.65
CLN3-210ENST00000563874 SLC17A3O00476 420 aa10.97□□□□□ -0.65
CLN3-210ENST00000563874 KITLGP21583 273 aa10.97□□□□□ -0.65
CLN3-210ENST00000563874 CBLN1P23435 193 aa10.97□□□□□ -0.65
CLN3-210ENST00000563874 WDR82Q6UXN9 313 aa10.97□□□□□ -0.65
CLN3-210ENST00000563874 OCC1Q8TAD7 63 aa10.97□□□□□ -0.65
CLN3-210ENST00000563874 Q8TCH9 128 aa10.97□□□□□ -0.65
CLN3-210ENST00000563874 MGST2Q99735 147 aa10.97□□□□□ -0.65
CLN3-210ENST00000563874 KCNIP2Q9NS61 270 aa10.97□□□□□ -0.65
CLN3-210ENST00000563874 ICE1Q9Y2F5 2266 aa10.96□□□□□ -0.65
CLN3-210ENST00000563874 TRGV5A0A0B4J1U4 118 aa10.96□□□□□ -0.65
CLN3-210ENST00000563874 J3QW42 95 aa10.96□□□□□ -0.65
CLN3-210ENST00000563874 TMPRSS2O15393 492 aa10.96□□□□□ -0.65
CLN3-210ENST00000563874 GPR12P47775 334 aa10.96□□□□□ -0.65
CLN3-210ENST00000563874 NUTF2P61970 127 aaKnown RBP10.96□□□□□ -0.65
CLN3-210ENST00000563874 RPL39P5Q59GN2 51 aa10.96□□□□□ -0.65
CLN3-210ENST00000563874 CLUHP3Q96NS8 147 aa10.96□□□□□ -0.65
CLN3-210ENST00000563874 DIRC2Q96SL1 478 aa10.96□□□□□ -0.65
CLN3-210ENST00000563874 HSD17B10Q99714 261 aaKnown RBP10.96□□□□□ -0.65
CLN3-210ENST00000563874 ZDHHC11Q9H8X9 412 aa10.96□□□□□ -0.65
CLN3-210ENST00000563874 GNG12Q9UBI6 72 aa10.96□□□□□ -0.65
CLN3-210ENST00000563874 NAGKQ9UJ70 344 aa10.96□□□□□ -0.65
CLN3-210ENST00000563874 KLF13Q9Y2Y9 288 aaPredicted RBP10.96□□□□□ -0.65
CLN3-210ENST00000563874 HCFC1P51610 2035 aa10.96□□□□□ -0.65
CLN3-210ENST00000563874 A8MXE2 369 aa10.96□□□□□ -0.66
CLN3-210ENST00000563874 WISP2O76076 250 aa10.96□□□□□ -0.66
CLN3-210ENST00000563874 FRMD6-AS1P0C7T7 363 aa10.96□□□□□ -0.66
CLN3-210ENST00000563874 GABRA6Q16445 453 aa10.96□□□□□ -0.66
CLN3-210ENST00000563874 HLA-DRB5Q30154 266 aa10.96□□□□□ -0.66
CLN3-210ENST00000563874 PEAR1Q5VY43 1037 aaPredicted RBP10.96□□□□□ -0.66
CLN3-210ENST00000563874 SPATA31B1PQ5VZV4 182 aa10.96□□□□□ -0.66
CLN3-210ENST00000563874 CNEP1R1Q8N9A8 125 aa10.96□□□□□ -0.66
CLN3-210ENST00000563874 OR4A16Q8NH70 328 aa10.96□□□□□ -0.66
CLN3-210ENST00000563874 YTHDF2Q9Y5A9 579 aaKnown RBP10.96□□□□□ -0.66
CLN3-210ENST00000563874 CADP27708 2225 aa10.96□□□□□ -0.66
CLN3-210ENST00000563874 BOD1L1Q8NFC6 3051 aa10.96□□□□□ -0.66
CLN3-210ENST00000563874 M0R1X1 148 aa10.95□□□□□ -0.66
CLN3-210ENST00000563874 TIMM8AO60220 97 aaPredicted RBP10.95□□□□□ -0.66
CLN3-210ENST00000563874 SOX8P57073 446 aa10.95□□□□□ -0.66
CLN3-210ENST00000563874 TDRG1Q3Y452 100 aa10.95□□□□□ -0.66
CLN3-210ENST00000563874 TMEM210A6NLX4 147 aa10.95□□□□□ -0.66
CLN3-210ENST00000563874 DUTP33316 252 aaKnown RBP10.95□□□□□ -0.66
CLN3-210ENST00000563874 RPL29P47914 159 aaKnown RBP10.95□□□□□ -0.66
CLN3-210ENST00000563874 FOXL1Q12952 345 aa10.95□□□□□ -0.66
CLN3-210ENST00000563874 TBX15Q96SF7 602 aa10.95□□□□□ -0.66
CLN3-210ENST00000563874 SEPSECSQ9HD40 501 aaKnown RBP10.95□□□□□ -0.66
CLN3-210ENST00000563874 RPH3ALQ9UNE2 315 aa10.95□□□□□ -0.66
CLN3-210ENST00000563874 TMEM265A0A087WTH1 108 aa10.95□□□□□ -0.66
CLN3-210ENST00000563874 SPINT2O43291 252 aa10.95□□□□□ -0.66
CLN3-210ENST00000563874 CD99P14209 185 aa10.95□□□□□ -0.66
CLN3-210ENST00000563874 UTF1Q5T230 341 aa10.95□□□□□ -0.66
CLN3-210ENST00000563874 CD177Q8N6Q3 437 aa10.95□□□□□ -0.66
CLN3-210ENST00000563874 MDS2Q8NDY4 140 aa10.95□□□□□ -0.66
CLN3-210ENST00000563874 LEAP2Q969E1 77 aa10.95□□□□□ -0.66
CLN3-210ENST00000563874 GGTLC1Q9BX51 225 aa10.95□□□□□ -0.66
CLN3-210ENST00000563874 RYDENQ9NUL5 291 aaKnown RBP10.95□□□□□ -0.66
CLN3-210ENST00000563874 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.94□□□□□ -0.66
CLN3-210ENST00000563874 TIMP3P35625 211 aa10.94□□□□□ -0.66
CLN3-210ENST00000563874 ERVFC1-1P60608 527 aa10.94□□□□□ -0.66
CLN3-210ENST00000563874 ZNF90Q03938 601 aa10.94□□□□□ -0.66
CLN3-210ENST00000563874 OR10G8Q8NGN5 311 aa10.94□□□□□ -0.66
CLN3-210ENST00000563874 CMTM2Q8TAZ6 248 aa10.94□□□□□ -0.66
CLN3-210ENST00000563874 CDX2Q99626 313 aaPredicted RBP10.94□□□□□ -0.66
CLN3-210ENST00000563874 FOXH1O75593 365 aa10.94□□□□□ -0.66
CLN3-210ENST00000563874 STAG3L2P0CL84 134 aa10.94□□□□□ -0.66
CLN3-210ENST00000563874 STAG3L3P0CL85 134 aa10.94□□□□□ -0.66
CLN3-210ENST00000563874 BMI1P35226 326 aa10.94□□□□□ -0.66
CLN3-210ENST00000563874 RPL31P62899 125 aaKnown RBP10.94□□□□□ -0.66
CLN3-210ENST00000563874 Q5PR19 223 aa10.94□□□□□ -0.66
CLN3-210ENST00000563874 VHLLQ6RSH7 139 aa10.94□□□□□ -0.66
CLN3-210ENST00000563874 RAB1CQ92928 201 aa10.94□□□□□ -0.66
CLN3-210ENST00000563874 TP53TG3Q9ULZ0 132 aa10.94□□□□□ -0.66
CLN3-210ENST00000563874 C15orf65H3BRN8 121 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 K7EN84 100 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 TOMM20LQ6UXN7 152 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 ZNF705AQ6ZN79 300 aaPredicted RBP10.93□□□□□ -0.66
CLN3-210ENST00000563874 UBALD2Q8IYN6 164 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 CXXC4Q9H2H0 198 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 F2Z2F3 143 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 SPINK4O60575 86 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 GFRA3O60609 400 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 OPRK1P41145 380 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 ZNF134P52741 427 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms