RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 OR4C13Q8NGP0 309 aa17.19■□□□□ 0.34
CLN3-209ENST00000561689 PSENENQ9NZ42 101 aa17.19■□□□□ 0.34
CLN3-209ENST00000561689 HILPDAQ9Y5L2 63 aa17.19■□□□□ 0.34
CLN3-209ENST00000561689 WSB1Q9Y6I7 421 aa17.19■□□□□ 0.34
CLN3-209ENST00000561689 CST7O76096 145 aa17.19■□□□□ 0.34
CLN3-209ENST00000561689 IFNA17P01571 189 aa17.19■□□□□ 0.34
CLN3-209ENST00000561689 MC5RP33032 325 aa17.19■□□□□ 0.34
CLN3-209ENST00000561689 RAB13P51153 203 aa17.19■□□□□ 0.34
CLN3-209ENST00000561689 RPS16P62249 146 aaKnown RBP17.19■□□□□ 0.34
CLN3-209ENST00000561689 UBA52P62987 128 aaKnown RBP17.19■□□□□ 0.34
CLN3-209ENST00000561689 TPTE2P1Q5T6R2 138 aa17.19■□□□□ 0.34
CLN3-209ENST00000561689 RITA1Q96K30 269 aa17.19■□□□□ 0.34
CLN3-209ENST00000561689 TBX15Q96SF7 602 aa17.19■□□□□ 0.34
CLN3-209ENST00000561689 DPM3Q9P2X0 92 aa17.19■□□□□ 0.34
CLN3-209ENST00000561689 POLR3KQ9Y2Y1 108 aaPredicted RBP17.19■□□□□ 0.34
CLN3-209ENST00000561689 ANKRD17O75179 2603 aaKnown RBP17.18■□□□□ 0.34
CLN3-209ENST00000561689 MED6O75586 246 aa17.18■□□□□ 0.34
CLN3-209ENST00000561689 SAA1P0DJI8 122 aaPredicted RBP17.18■□□□□ 0.34
CLN3-209ENST00000561689 PAX6P26367 422 aa17.18■□□□□ 0.34
CLN3-209ENST00000561689 ARHGDIBP52566 201 aa17.18■□□□□ 0.34
CLN3-209ENST00000561689 AANATQ16613 207 aa17.18■□□□□ 0.34
CLN3-209ENST00000561689 RPL7L1Q6DKI1 246 aaKnown RBP17.18■□□□□ 0.34
CLN3-209ENST00000561689 SMIM8Q96KF7 97 aa17.18■□□□□ 0.34
CLN3-209ENST00000561689 SLC25A31Q9H0C2 315 aa17.18■□□□□ 0.34
CLN3-209ENST00000561689 WNK2Q9Y3S1 2297 aa17.18■□□□□ 0.34
CLN3-209ENST00000561689 NBPF19A0A087WUL8 3843 aa17.17■□□□□ 0.34
CLN3-209ENST00000561689 CEBPZOSA8MTT3 80 aa17.17■□□□□ 0.34
CLN3-209ENST00000561689 TAAR5O14804 337 aa17.17■□□□□ 0.34
CLN3-209ENST00000561689 TMEM267Q0VDI3 215 aaPredicted RBP17.17■□□□□ 0.34
CLN3-209ENST00000561689 AARDQ4LEZ3 155 aa17.17■□□□□ 0.34
CLN3-209ENST00000561689 TMEM217Q8N7C4 229 aa17.17■□□□□ 0.34
CLN3-209ENST00000561689 DTD1Q8TEA8 209 aa17.17■□□□□ 0.34
CLN3-209ENST00000561689 MS4A7Q9GZW8 240 aaPredicted RBP17.17■□□□□ 0.34
CLN3-209ENST00000561689 WFDC1Q9HC57 220 aa17.17■□□□□ 0.34
CLN3-209ENST00000561689 NAV2Q8IVL1 2488 aa17.17■□□□□ 0.34
CLN3-209ENST00000561689 TXNL1O43396 289 aa17.17■□□□□ 0.34
CLN3-209ENST00000561689 SPANXN5Q5MJ07 72 aa17.17■□□□□ 0.34
CLN3-209ENST00000561689 REG4Q9BYZ8 158 aa17.17■□□□□ 0.34
CLN3-209ENST00000561689 NUP50Q9UKX7 468 aa17.17■□□□□ 0.34
CLN3-209ENST00000561689 APCP25054 2843 aa17.16■□□□□ 0.34
CLN3-209ENST00000561689 A0A1W2PPI3 338 aa17.16■□□□□ 0.34
CLN3-209ENST00000561689 C15orf61A6NNL5 157 aa17.16■□□□□ 0.34
CLN3-209ENST00000561689 TEX46H3BTG2 121 aa17.16■□□□□ 0.34
CLN3-209ENST00000561689 I3L521 148 aa17.16■□□□□ 0.34
CLN3-209ENST00000561689 IL6RP08887 468 aaPredicted RBP17.16■□□□□ 0.34
CLN3-209ENST00000561689 MYOD1P15172 320 aa17.16■□□□□ 0.34
CLN3-209ENST00000561689 USF1P22415 310 aaPredicted RBP17.16■□□□□ 0.34
CLN3-209ENST00000561689 DEFB113Q30KQ7 82 aa17.16■□□□□ 0.34
CLN3-209ENST00000561689 FAM74A1Q5RGS3 127 aa17.16■□□□□ 0.34
CLN3-209ENST00000561689 AIFM2Q9BRQ8 373 aa17.16■□□□□ 0.34
CLN3-209ENST00000561689 UPK2O00526 184 aa17.15■□□□□ 0.34
CLN3-209ENST00000561689 CEACAM3P40198 252 aa17.15■□□□□ 0.34
CLN3-209ENST00000561689 SPCS3P61009 180 aa17.15■□□□□ 0.34
CLN3-209ENST00000561689 STOML3Q8TAV4 291 aa17.15■□□□□ 0.34
CLN3-209ENST00000561689 C17orf50Q8WW18 174 aa17.15■□□□□ 0.34
CLN3-209ENST00000561689 TMEM14BQ9NUH8 114 aa17.15■□□□□ 0.34
CLN3-209ENST00000561689 BEX4Q9NWD9 120 aaPredicted RBP17.15■□□□□ 0.34
CLN3-209ENST00000561689 TIMM23O14925 209 aa17.15■□□□□ 0.34
CLN3-209ENST00000561689 SLC25A16P16260 332 aa17.15■□□□□ 0.34
CLN3-209ENST00000561689 TAS2R30P59541 319 aa17.15■□□□□ 0.34
CLN3-209ENST00000561689 CLINT1Q14677 625 aa17.15■□□□□ 0.34
CLN3-209ENST00000561689 ZNF429Q86V71 674 aa17.15■□□□□ 0.34
CLN3-209ENST00000561689 PUSL1Q8N0Z8 303 aaKnown RBP17.15■□□□□ 0.34
CLN3-209ENST00000561689 BET1LQ9NYM9 111 aa17.15■□□□□ 0.34
CLN3-209ENST00000561689 FOXA2Q9Y261 457 aaPredicted RBP17.15■□□□□ 0.34
CLN3-209ENST00000561689 ABCA2Q9BZC7 2435 aa17.14■□□□□ 0.33
CLN3-209ENST00000561689 IGLV2-23P01705 113 aa17.14■□□□□ 0.33
CLN3-209ENST00000561689 OPN1MWP04001 364 aa17.14■□□□□ 0.33
CLN3-209ENST00000561689 METTL15P1P0C7V9 234 aa17.14■□□□□ 0.33
CLN3-209ENST00000561689 OPN1MW2P0DN77 364 aa17.14■□□□□ 0.33
CLN3-209ENST00000561689 OPN1MW3P0DN78 364 aa17.14■□□□□ 0.33
CLN3-209ENST00000561689 TPT1P13693 172 aaKnown RBP17.14■□□□□ 0.33
CLN3-209ENST00000561689 LGALS4P56470 323 aa17.14■□□□□ 0.33
CLN3-209ENST00000561689 SSX2Q16385 188 aa17.14■□□□□ 0.33
CLN3-209ENST00000561689 STX12Q86Y82 276 aa17.14■□□□□ 0.33
CLN3-209ENST00000561689 BAP18Q8IXM2 172 aa17.14■□□□□ 0.33
CLN3-209ENST00000561689 OR52E5Q8NH55 327 aa17.14■□□□□ 0.33
CLN3-209ENST00000561689 OR51B2Q9Y5P1 312 aa17.14■□□□□ 0.33
CLN3-209ENST00000561689 GCN1Q92616 2671 aaKnown RBP17.14■□□□□ 0.33
CLN3-209ENST00000561689 KBTBD11O94819 623 aa17.13■□□□□ 0.33
CLN3-209ENST00000561689 DYNLT3P51808 116 aa17.13■□□□□ 0.33
CLN3-209ENST00000561689 PAX8Q06710 450 aa17.13■□□□□ 0.33
CLN3-209ENST00000561689 BAXQ07812 192 aa17.13■□□□□ 0.33
CLN3-209ENST00000561689 OR5C1Q8NGR4 320 aa17.13■□□□□ 0.33
CLN3-209ENST00000561689 PRNDQ9UKY0 176 aa17.13■□□□□ 0.33
CLN3-209ENST00000561689 TCF19Q9Y242 345 aa17.13■□□□□ 0.33
CLN3-209ENST00000561689 MFSD2BA6NFX1 497 aa17.13■□□□□ 0.33
CLN3-209ENST00000561689 SULT1A1P50225 295 aa17.13■□□□□ 0.33
CLN3-209ENST00000561689 UBE2E1P51965 193 aa17.13■□□□□ 0.33
CLN3-209ENST00000561689 DYNAPQ8N1N2 210 aa17.13■□□□□ 0.33
CLN3-209ENST00000561689 OR4C12Q96R67 309 aa17.13■□□□□ 0.33
CLN3-209ENST00000561689 SLC25A17O43808 307 aa17.12■□□□□ 0.33
CLN3-209ENST00000561689 MSMBP08118 114 aa17.12■□□□□ 0.33
CLN3-209ENST00000561689 CNTFRP26992 372 aa17.12■□□□□ 0.33
CLN3-209ENST00000561689 CIB3Q96Q77 187 aaPredicted RBP17.12■□□□□ 0.33
CLN3-209ENST00000561689 HINT2Q9BX68 163 aa17.12■□□□□ 0.33
CLN3-209ENST00000561689 JTBO76095 146 aa17.11■□□□□ 0.33
CLN3-209ENST00000561689 LGALS7P47929 136 aa17.11■□□□□ 0.33
CLN3-209ENST00000561689 HSPE1P61604 102 aaKnown RBP17.11■□□□□ 0.33
CLN3-209ENST00000561689 PDLIM3Q53GG5 364 aaPredicted RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms