RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	ANKRD36BP1	Q96IX9	119 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	IMMP2L	Q96T52	175 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	RETNLB	Q9BQ08	111 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	HSPB9	Q9BQS6	159 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	TTTY13	Q9BZ97	58 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	UPF3B	Q9BZI7	483 aa	Known RBP	0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	CHST6	Q9GZX3	395 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	OR51I2	Q9H344	312 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	HRASLS	Q9HDD0	168 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNHIT6	Q9NWK9	470 aa	Known RBP	0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	BABAM2	Q9NXR7	383 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	USE1	Q9NZ43	259 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	RSL24D1	Q9UHA3	163 aa	Known RBP	0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	C3orf18	Q9UK00	162 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	DKKL1	Q9UK85	242 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	ANAPC10	Q9UM13	185 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	RPL26L1	Q9UNX3	145 aa	Known RBP	0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	PRELID1	Q9Y255	219 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	C15orf41	Q9Y2V0	281 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	COQ4	Q9Y3A0	265 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	COL4A1	P02462	1669 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	RERE	Q9P2R6	1566 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	KDM5B	Q9UGL1	1544 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	DENND4B	O75064	1496 aa	Predicted RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	GRIN2B	Q13224	1484 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	SCAF11	Q99590	1463 aa	Known RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	NAV1	Q8NEY1	1877 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	DCC	P43146	1447 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	C9orf84	Q5VXU9	1444 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	SDK1	Q7Z5N4	2213 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	CCDC88C	Q9P219	2028 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	TRGV2	A0A075B6R0	118 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	MEIKIN	A0A087WXM9	373 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435		A0A0D9SEW6	157 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	IGHV1-69-2	A0A0G2JMI3	117 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435		A0A1B0GVG6	124 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	TRAPPC13	A5PLN9	417 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	RFPL4A	A6NLU0	287 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	SIGLEC16	A6NMB1	481 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	EVPLL	A8MZ36	301 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	IBA57-AS1	B1ANH7	110 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	LRRN3	E7EW58	273 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	RFPL4AL1	F8VTS6	287 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435		F8W036	122 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435		H0Y980	276 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435		H7C2G1	150 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	TXNDC9	O14530	226 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	COX7A2L	O14548	114 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	LEPROT	O15243	131 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	ACOX3	O15254	700 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	TGOLN2	O43493	480 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	CREBL2	O60519	120 aa	Predicted RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	MRPS14	O60783	128 aa	Known RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	PGLYRP1	O75594	196 aa	Predicted RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	DCTN3	O75935	186 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	CIAO1	O76071	339 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	NSA2	O95478	260 aa	Known RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	ISG15	P05161	165 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	SERPINA7	P05543	415 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	LGALS1	P09382	135 aa	Known RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	TFPT	P0C1Z6	253 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	OR5G3	P0C626	314 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	FGF6	P10767	208 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	MYL12A	P19105	171 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	CA5A	P35218	305 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	SLCO1A2	P46721	670 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	RPL28	P46779	137 aa	Known RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	MARCKSL1	P49006	195 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	EVX1	P49640	407 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	HINT1	P49773	126 aa	Predicted RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	FXYD2	P54710	66 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	EMP1	P54849	157 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	AQP4	P55087	323 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	TPI1	P60174	286 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	RAB14	P61106	215 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	MAGOH	P61326	146 aa	Known RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	NAA20	P61599	178 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	RPL30	P62888	115 aa	Known RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	GNA12	Q03113	381 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	CAV1	Q03135	178 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	EMX1	Q04741	257 aa	Predicted RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	RPL18	Q07020	188 aa	Known RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	SLC38A11	Q08AI6	406 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	BATF	Q16520	125 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	C1orf195	Q5TG92	126 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	SYPL2	Q5VXT5	272 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	TMEM42	Q69YG0	159 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	UNQ6190/PRO20217	Q6UXQ8	127 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	ALKAL1	Q6UXT8	129 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435		Q6ZSA8	131 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	RASSF6	Q6ZTQ3	369 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	HIST2H3A	Q71DI3	136 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	SSX8	Q7RTT4	187 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	SLC35E3	Q7Z769	313 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	LRRC28	Q86X40	367 aa	Predicted RBP	0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	C10orf67	Q8IYJ2	551 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	C1orf158	Q8N1D5	194 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	TMEM86B	Q8N661	226 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	OR1M1	Q8NGA1	313 aa		0.22	□□□□□ -2.37
SPG11-222	ENST00000560435	OR8B12	Q8NGG6	310 aa		0.22	□□□□□ -2.37

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms