RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 CARD17Q5XLA6 110 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 BOKQ9UMX3 212 aaPredicted RBP9.13□□□□□ -0.95
USP3-206ENST00000558157 CFAP47Q6ZTR5 3102 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 FRYQ5TBA9 3013 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 SP1P08047 785 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 PSG2P11465 335 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 GDF1P27539 372 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 CD1BP29016 333 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 HOXC12P31275 282 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 IER3P46695 156 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 ZNF324BQ6AW86 544 aaPredicted RBP9.13□□□□□ -0.95
USP3-206ENST00000558157 Q6ZVH6 145 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 YRDCQ86U90 279 aaKnown RBP9.13□□□□□ -0.95
USP3-206ENST00000558157 SPACA3Q8IXA5 215 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 SAXO1Q8IYX7 474 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 OR10P1Q8NGE3 313 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 APOBEC3DQ96AK3 386 aaPredicted RBP9.13□□□□□ -0.95
USP3-206ENST00000558157 IL19Q9UHD0 177 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 OR2W1Q9Y3N9 320 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 CNTRLQ7Z7A1 2325 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 C9JCJ5 164 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 F2Z2F3 143 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 H0YJW9 148 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 CORTO00230 105 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 CA2P00918 260 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 SCTP09683 121 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 MEOX1P50221 254 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 ZNF83P51522 516 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 KRTCAP3Q53RY4 240 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 OR4A47Q6IF82 309 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 LHFPL4Q7Z7J7 247 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 DEFB125Q8N687 156 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 ZNF114Q8NC26 417 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 RDH5Q92781 318 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 NPCDR1Q9BY65 106 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 LIN7CQ9NUP9 197 aaKnown RBP9.12□□□□□ -0.95
USP3-206ENST00000558157 RNF24Q9Y225 148 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 KLF13Q9Y2Y9 288 aaPredicted RBP9.12□□□□□ -0.95
USP3-206ENST00000558157 LOC400499M0QZD8 3231 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 A0A1W2PNR3 127 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 TNFSF11O14788 317 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 CEACAM4O75871 244 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 PSG1P11464 419 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 CD46P15529 392 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 GFRA1P56159 465 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 B3GALT5-AS1P59052 145 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 HTD2P86397 168 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 TLE1Q04724 770 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 ZNF766Q5HY98 468 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 SCCPDHQ8NBX0 429 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 TTTY12Q9BZ98 90 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 ZNF430Q9H8G1 570 aaPredicted RBP9.12□□□□□ -0.95
USP3-206ENST00000558157 APC2O95996 2303 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 MED12Q93074 2177 aa9.12□□□□□ -0.95
USP3-206ENST00000558157 PIEZO1Q92508 2521 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 TRBV20OR9-2A0A075B6H5 130 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 TRBV6-6A0A0A6YYG2 114 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 AQP7P3A6NL99 342 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 TAX1BP3O14907 124 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 HLA-DQA1P01909 254 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 PMCHP20382 165 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 WIPI1Q5MNZ9 446 aaPredicted RBP9.11□□□□□ -0.95
USP3-206ENST00000558157 IGFL2Q6UWQ7 119 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 C12orf54Q6X4T0 127 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 ZNF596Q8TC21 504 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 GPHA2Q96T91 129 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 PLEK2Q9NYT0 353 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 SSUH2Q9Y2M2 353 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 TNRC6AQ8NDV7 1962 aaKnown RBP9.11□□□□□ -0.95
USP3-206ENST00000558157 GAGE12BA1L429 117 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 NPIPB11E5RHQ5 1161 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 IGKV1-39P01597 117 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 IGKV1-5P01602 117 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 IGKV1D-39P04432 117 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 OR10J4P0C629 311 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 CRYGSP22914 178 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 ATP5G3P48201 142 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 SELENOVP59797 346 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 CX3CL1P78423 397 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 PLGLB1Q02325 96 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 DAZAP2Q15038 168 aaPredicted RBP9.11□□□□□ -0.95
USP3-206ENST00000558157 SMIM21Q3B7S5 101 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 MMD2Q8IY49 270 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 FAM58AQ8N1B3 248 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 OR52L2PQ8NGH6 319 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 OCC1Q8TAD7 63 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 TMEM54Q969K7 222 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 NABP1Q96AH0 204 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 DERL1Q9BUN8 251 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 WNT10AQ9GZT5 417 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 ST20Q9HBF5 79 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 B4GALT7Q9UBV7 327 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 NAT8BQ9UHF3 227 aa9.11□□□□□ -0.95
USP3-206ENST00000558157 CLDN1O95832 211 aa9.1□□□□□ -0.95
USP3-206ENST00000558157 CRYAAP02489 173 aa9.1□□□□□ -0.95
USP3-206ENST00000558157 CELA3AP09093 270 aa9.1□□□□□ -0.95
USP3-206ENST00000558157 LINC00869P0C866 280 aa9.1□□□□□ -0.95
USP3-206ENST00000558157 MAGEA5P43359 124 aa9.1□□□□□ -0.95
USP3-206ENST00000558157 THBS3P49746 956 aa9.1□□□□□ -0.95
USP3-206ENST00000558157 CLDN17P56750 224 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms