RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	MRPL18	Q9H0U6	180 aa	Known RBP	13.5	□□□□□ -0.25
SHMT2-231	ENST00000557433	OPN3	Q9H1Y3	402 aa	Predicted RBP	13.5	□□□□□ -0.25
SHMT2-231	ENST00000557433	RAB9B	Q9NP90	201 aa		13.5	□□□□□ -0.25
SHMT2-231	ENST00000557433	PPP1R14D	Q9NXH3	145 aa		13.5	□□□□□ -0.25
SHMT2-231	ENST00000557433	SLC25A10	Q9UBX3	287 aa	Predicted RBP	13.5	□□□□□ -0.25
SHMT2-231	ENST00000557433	LAMTOR5	O43504	91 aa		13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	RELB	Q01201	579 aa		13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	RPEL1	Q2QD12	228 aa		13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	WDR73	Q6P4I2	378 aa		13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	TEPP	Q6URK8	271 aa		13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433		Q6ZR03	302 aa		13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	C1orf162	Q8NEQ5	155 aa	Predicted RBP	13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433		A0A1B0GWJ7	208 aa		13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	RRH	O14718	337 aa		13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	NUPR1	O60356	82 aa		13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	RPLP1	P05386	114 aa	Known RBP	13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	IL6R	P08887	468 aa	Predicted RBP	13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	RPL31	P62899	125 aa	Known RBP	13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	GAGE1	Q13065	139 aa		13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	MORN2	Q502X0	79 aa		13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	FAM53A	Q6NSI3	398 aa	Predicted RBP	13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	ZNF826P	Q6ZT77	177 aa		13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	OR5AU1	Q8NGC0	362 aa		13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	S1PR3	Q99500	378 aa		13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	YTHDF2	Q9Y5A9	579 aa	Known RBP	13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433		R4GN57	208 aa		13.49	□□□□□ -0.25
SHMT2-231	ENST00000557433	LAMA1	P25391	3075 aa		13.48	□□□□□ -0.25
SHMT2-231	ENST00000557433	IGHV3-43	A0A0B4J1X8	118 aa		13.48	□□□□□ -0.25
SHMT2-231	ENST00000557433	IGKV3-15	P01624	115 aa		13.48	□□□□□ -0.25
SHMT2-231	ENST00000557433	IGHV3-43D	P0DP04	118 aa		13.48	□□□□□ -0.25
SHMT2-231	ENST00000557433	TPTE2P1	Q5T6R2	138 aa		13.48	□□□□□ -0.25
SHMT2-231	ENST00000557433	TOMM20L	Q6UXN7	152 aa		13.48	□□□□□ -0.25
SHMT2-231	ENST00000557433		Q6ZT83	130 aa		13.48	□□□□□ -0.25
SHMT2-231	ENST00000557433	TCF23	Q7RTU1	214 aa		13.48	□□□□□ -0.25
SHMT2-231	ENST00000557433	SDSL	Q96GA7	329 aa		13.48	□□□□□ -0.25
SHMT2-231	ENST00000557433	EAF1	Q96JC9	268 aa	Predicted RBP	13.48	□□□□□ -0.25
SHMT2-231	ENST00000557433	NCOR1P1	Q9H4R4	102 aa		13.48	□□□□□ -0.25
SHMT2-231	ENST00000557433	PARD6A	Q9NPB6	346 aa		13.48	□□□□□ -0.25
SHMT2-231	ENST00000557433	TMEM167B	Q9NRX6	74 aa		13.48	□□□□□ -0.25
SHMT2-231	ENST00000557433	GNG12	Q9UBI6	72 aa		13.48	□□□□□ -0.25
SHMT2-231	ENST00000557433	TCF19	Q9Y242	345 aa		13.48	□□□□□ -0.25
SHMT2-231	ENST00000557433	PGPEP1L	A6NFU8	196 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433		M0R1X1	148 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	TIMM8A	O60220	97 aa	Predicted RBP	13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	HOXC12	P31275	282 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	RAB7A	P51149	207 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	ATP5I	P56385	69 aa	Predicted RBP	13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	EFNB3	Q15768	340 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433		Q6ZWC4	215 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	GCNT2	Q8N0V5	402 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	OR1L6	Q8NGR2	347 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	OR4S2	Q8NH73	311 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	SPRR3	Q9UBC9	169 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	TP53TG3	Q9ULZ0	132 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	F2RL2	O00254	374 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	MGST3	O14880	152 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	PRDX2	P32119	198 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	RTL8B	Q17RB0	113 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	ZNF705A	Q6ZN79	300 aa	Predicted RBP	13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	RFESD	Q8TAC1	157 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	WFIKKN1	Q96NZ8	548 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	DEFB127	Q9H1M4	99 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	TMEM140	Q9NV12	185 aa		13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	FOXA2	Q9Y261	457 aa	Predicted RBP	13.47	□□□□□ -0.25
SHMT2-231	ENST00000557433	SAA2-SAA4	A0A096LPE2	208 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	IGHV3-64D	A0A0J9YX35	117 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	C15orf61	A6NNL5	157 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	DEFB108A	A8MXU0	73 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	FCN1	O00602	326 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	AQP7	O14520	342 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	PROP1	O75360	226 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	SERF1A	O75920	110 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	CBLN1	P23435	193 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	OR10J3	Q5JRS4	329 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	MBNL2	Q5VZF2	373 aa	Known RBP	13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	VASH2	Q86V25	355 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	CXorf67	Q86X51	503 aa	Predicted RBP	13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	BAGE3	Q86Y29	109 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	BAGE2	Q86Y30	109 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	MMD2	Q8IY49	270 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	STPG3	Q8N7X2	389 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	TMEM178A	Q8NBL3	297 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	VAMP8	Q9BV40	100 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	C19orf24	Q9BVV8	132 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	ENY2	Q9NPA8	101 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	FOXJ2	Q9P0K8	574 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	SLC45A2	Q9UMX9	530 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	USF3	Q68DE3	2245 aa		13.46	□□□□□ -0.25
SHMT2-231	ENST00000557433	GRIFIN	A4D1Z8	144 aa		13.45	□□□□□ -0.26
SHMT2-231	ENST00000557433		K7EN84	100 aa		13.45	□□□□□ -0.26
SHMT2-231	ENST00000557433	MMP23A	O75900	390 aa		13.45	□□□□□ -0.26
SHMT2-231	ENST00000557433	BMP5	P22003	454 aa		13.45	□□□□□ -0.26
SHMT2-231	ENST00000557433	NPY1R	P25929	384 aa		13.45	□□□□□ -0.26
SHMT2-231	ENST00000557433	FAM214B	Q7L5A3	538 aa		13.45	□□□□□ -0.26
SHMT2-231	ENST00000557433	CD177	Q8N6Q3	437 aa		13.45	□□□□□ -0.26
SHMT2-231	ENST00000557433	SLC24A4	Q8NFF2	622 aa		13.45	□□□□□ -0.26
SHMT2-231	ENST00000557433	CDX2	Q99626	313 aa	Predicted RBP	13.45	□□□□□ -0.26
SHMT2-231	ENST00000557433	HSPB9	Q9BQS6	159 aa		13.45	□□□□□ -0.26

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