RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 CASTOR1Q8WTX7 329 aa8.1□□□□□ -1.11
SYNE2-215ENST00000554997 CHPT1Q8WUD6 406 aa8.1□□□□□ -1.11
SYNE2-215ENST00000554997 MITD1Q8WV92 249 aa8.1□□□□□ -1.11
SYNE2-215ENST00000554997 RBPMSQ93062 196 aaKnown RBP8.1□□□□□ -1.11
SYNE2-215ENST00000554997 PRSS22Q9GZN4 317 aa8.1□□□□□ -1.11
SYNE2-215ENST00000554997 NPFFR1Q9GZQ6 430 aa8.1□□□□□ -1.11
SYNE2-215ENST00000554997 BET1LQ9NYM9 111 aa8.1□□□□□ -1.11
SYNE2-215ENST00000554997 SHPKQ9UHJ6 478 aa8.1□□□□□ -1.11
SYNE2-215ENST00000554997 JMJD1CQ15652 2540 aa8.1□□□□□ -1.11
SYNE2-215ENST00000554997 DUXBA0A1W2PPF3 345 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 SNRPGP15A8MWD9 76 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 UPK2O00526 184 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 TSPAN9O75954 239 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 IGKV1-5P01602 117 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 P0C879 139 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 VDAC1P21796 283 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 ERVK-16P61578 105 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 PLGLAQ15195 96 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 PRSS8Q16651 343 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 MRGPRG-AS1Q2M3A8 158 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 SSX9Q7RTT3 188 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 H2BFWTQ7Z2G1 175 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 LYZL2Q7Z4W2 148 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 FAM219AQ8IW50 185 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 OR52B4Q8NGK2 314 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 COQ8AQ8NI60 647 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 LSM10Q969L4 123 aaKnown RBP8.09□□□□□ -1.11
SYNE2-215ENST00000554997 RRNAD1Q96FB5 475 aaKnown RBP8.09□□□□□ -1.11
SYNE2-215ENST00000554997 PHB2Q99623 299 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 SEC22CQ9BRL7 303 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 RANBP3Q9H6Z4 567 aaPredicted RBP8.09□□□□□ -1.11
SYNE2-215ENST00000554997 GPN1Q9HCN4 374 aaPredicted RBP8.09□□□□□ -1.11
SYNE2-215ENST00000554997 TMEM140Q9NV12 185 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 PRR13Q9NZ81 148 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 MMP24Q9Y5R2 645 aa8.09□□□□□ -1.11
SYNE2-215ENST00000554997 CREBL2O60519 120 aaPredicted RBP8.08□□□□□ -1.12
SYNE2-215ENST00000554997 KBTBD11O94819 623 aa8.08□□□□□ -1.12
SYNE2-215ENST00000554997 IGHG2P01859 326 aa8.08□□□□□ -1.12
SYNE2-215ENST00000554997 HLA-DRB1P01911 266 aa8.08□□□□□ -1.12
SYNE2-215ENST00000554997 MAS1LP35410 378 aa8.08□□□□□ -1.12
SYNE2-215ENST00000554997 CX3CL1P78423 397 aa8.08□□□□□ -1.12
SYNE2-215ENST00000554997 RELBQ01201 579 aa8.08□□□□□ -1.12
SYNE2-215ENST00000554997 PJVKQ0ZLH3 352 aa8.08□□□□□ -1.12
SYNE2-215ENST00000554997 PRIMA1Q86XR5 153 aa8.08□□□□□ -1.12
SYNE2-215ENST00000554997 MMD2Q8IY49 270 aa8.08□□□□□ -1.12
SYNE2-215ENST00000554997 Q8N2B8 174 aa8.08□□□□□ -1.12
SYNE2-215ENST00000554997 C12orf45Q8N5I9 185 aaPredicted RBP8.08□□□□□ -1.12
SYNE2-215ENST00000554997 SLC35G3Q8N808 338 aa8.08□□□□□ -1.12
SYNE2-215ENST00000554997 GPR146Q96CH1 333 aa8.08□□□□□ -1.12
SYNE2-215ENST00000554997 CLCC1Q96S66 551 aa8.08□□□□□ -1.12
SYNE2-215ENST00000554997 C16orf95Q9H693 158 aa8.08□□□□□ -1.12
SYNE2-215ENST00000554997 ZNF430Q9H8G1 570 aaPredicted RBP8.08□□□□□ -1.12
SYNE2-215ENST00000554997 FKBP11Q9NYL4 201 aa8.08□□□□□ -1.12
SYNE2-215ENST00000554997 TMED3Q9Y3Q3 217 aa8.08□□□□□ -1.12
SYNE2-215ENST00000554997 IGHV7-81A0A0B4J1V7 117 aa8.07□□□□□ -1.12
SYNE2-215ENST00000554997 TRAV3A0A0B4J244 114 aa8.07□□□□□ -1.12
SYNE2-215ENST00000554997 A0A0B4J293 547 aa8.07□□□□□ -1.12
SYNE2-215ENST00000554997 LINC01548A6NM66 108 aa8.07□□□□□ -1.12
SYNE2-215ENST00000554997 DBX1A6NMT0 343 aa8.07□□□□□ -1.12
SYNE2-215ENST00000554997 SNAPC5O75971 98 aa8.07□□□□□ -1.12
SYNE2-215ENST00000554997 NDUFA7O95182 113 aa8.07□□□□□ -1.12
SYNE2-215ENST00000554997 OR9G9P0C7N8 305 aa8.07□□□□□ -1.12
SYNE2-215ENST00000554997 AKR1C2P52895 323 aa8.07□□□□□ -1.12
SYNE2-215ENST00000554997 RPL8P62917 257 aaKnown RBP8.07□□□□□ -1.12
SYNE2-215ENST00000554997 DMRTA1Q5VZB9 504 aa8.07□□□□□ -1.12
SYNE2-215ENST00000554997 Q6ZRM9 215 aa8.07□□□□□ -1.12
SYNE2-215ENST00000554997 Q6ZS46 218 aa8.07□□□□□ -1.12
SYNE2-215ENST00000554997 Q6ZSV7 163 aa8.07□□□□□ -1.12
SYNE2-215ENST00000554997 OR4A16Q8NH70 328 aa8.07□□□□□ -1.12
SYNE2-215ENST00000554997 OR51J1Q9H342 316 aa8.07□□□□□ -1.12
SYNE2-215ENST00000554997 TPSG1Q9NRR2 321 aa8.07□□□□□ -1.12
SYNE2-215ENST00000554997 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.07□□□□□ -1.12
SYNE2-215ENST00000554997 TEX50A0A1B0GTY4 177 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 A0A1B0GU03 582 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 C7orf66A4D0T2 115 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 SH2D7A6NKC9 451 aaPredicted RBP8.06□□□□□ -1.12
SYNE2-215ENST00000554997 KCNAB3O43448 404 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 ACTL6BO94805 426 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 CNIH1O95406 144 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 CA2P00918 260 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 IFNA21P01568 189 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 IGF1P05019 195 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 SLC25A6P12236 298 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 HLA-GP17693 338 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 SRSF2Q01130 221 aaKnown RBP8.06□□□□□ -1.12
SYNE2-215ENST00000554997 FXYD3Q14802 87 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 TATDN3Q17R31 274 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 NMSQ5H8A3 153 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 C9orf152Q5JTZ5 239 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 SLC35E3Q7Z769 313 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 ZNF429Q86V71 674 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 RNASE11Q8TAA1 199 aaKnown RBP8.06□□□□□ -1.12
SYNE2-215ENST00000554997 HSPB9Q9BQS6 159 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 ZNF702PQ9H963 129 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 TMEM14BQ9NUH8 114 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 COA4Q9NYJ1 87 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 CACFD1Q9UGQ2 172 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 PRNDQ9UKY0 176 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 ZNF257Q9Y2Q1 563 aa8.06□□□□□ -1.12
SYNE2-215ENST00000554997 A0A0G2JRQ6 117 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms