RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 XIRP1Q702N8 1843 aaKnown RBP4.53□□□□□ -1.68
VPS29-210ENST00000552130 TRBV20OR9-2A0A075B6H5 130 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 IGHV1-45A0A0A0MS14 117 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 TRAV5A0A0B4J249 113 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 A0A1B0GVG6 124 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 DHRS12A0PJE2 317 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 C20orf202A1L168 122 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 KRTAP16-1A8MUX0 517 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 IGLV2-23P01705 113 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 S100A2P29034 98 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 RPS11P62280 158 aaKnown RBP eCLIP4.53□□□□□ -1.68
VPS29-210ENST00000552130 SLC38A11Q08AI6 406 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 KIAA0040Q15053 153 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 OR8G1Q15617 311 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 MPV17L2Q567V2 206 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 TMEM69Q5SWH9 247 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 FKBP1CQ5VVH2 108 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 GUSBP11Q6P575 273 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 SLC25A29Q8N8R3 303 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 SGMS2Q8NHU3 365 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 MRPL30Q8TCC3 161 aaKnown RBP4.53□□□□□ -1.68
VPS29-210ENST00000552130 LMX1AQ8TE12 382 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 CARD19Q96LW7 228 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 WDR61Q9GZS3 305 aaKnown RBP4.53□□□□□ -1.68
VPS29-210ENST00000552130 MRPL16Q9NX20 251 aaKnown RBP4.53□□□□□ -1.68
VPS29-210ENST00000552130 TECPR2O15040 1411 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 FAM135BQ49AJ0 1406 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 TNS3Q68CZ2 1445 aa4.53□□□□□ -1.68
VPS29-210ENST00000552130 TRAV9-1A0A075B6T8 112 aa4.52□□□□□ -1.69
VPS29-210ENST00000552130 FAM72CH0Y354 149 aa4.52□□□□□ -1.69
VPS29-210ENST00000552130 H7BYZ3 331 aa4.52□□□□□ -1.69
VPS29-210ENST00000552130 NRASP01111 189 aa4.52□□□□□ -1.69
VPS29-210ENST00000552130 SEC11BP0C7V7 166 aa4.52□□□□□ -1.69
VPS29-210ENST00000552130 DIO3P55073 304 aa4.52□□□□□ -1.69
VPS29-210ENST00000552130 RPS25P62851 125 aaKnown RBP4.52□□□□□ -1.69
VPS29-210ENST00000552130 FAM72AQ5TYM5 149 aa4.52□□□□□ -1.69
VPS29-210ENST00000552130 FAM72DQ6L9T8 149 aa4.52□□□□□ -1.69
VPS29-210ENST00000552130 FAM72BQ86X60 149 aa4.52□□□□□ -1.69
VPS29-210ENST00000552130 ZDHHC22Q8N966 263 aa4.52□□□□□ -1.69
VPS29-210ENST00000552130 GTSF1Q8WW33 167 aa4.52□□□□□ -1.69
VPS29-210ENST00000552130 CAMK2N2Q96S95 79 aa4.52□□□□□ -1.69
VPS29-210ENST00000552130 RTL8AQ9BWD3 113 aa4.52□□□□□ -1.69
VPS29-210ENST00000552130 PCTPQ9UKL6 214 aa4.52□□□□□ -1.69
VPS29-210ENST00000552130 OVOS2A0A0G2JMS6 1433 aa4.52□□□□□ -1.69
VPS29-210ENST00000552130 THSD7AQ9UPZ6 1657 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 TRDV1A0A1B0GX56 115 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 DPRXA6NFQ7 191 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 PLA2G2AP14555 144 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 AZU1P20160 251 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 HBA1P69905 142 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 HOXC5Q00444 222 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 RELAQ04206 551 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 TMEM183BQ1AE95 376 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 GLYATL3Q5SZD4 288 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 LAIR2Q6ISS4 152 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 CAMK2N1Q7Z7J9 78 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 TMEM183AQ8IXX5 376 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 OR4E2Q8NGC2 313 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 OR4C16Q8NGL9 310 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 RAB2BQ8WUD1 216 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 SPIN2AQ99865 258 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 SPIN2BQ9BPZ2 258 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 PRADC1Q9BSG0 188 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 CHAC1Q9BUX1 264 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 FGFBP2Q9BYJ0 223 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 FGF23Q9GZV9 251 aaPredicted RBP4.51□□□□□ -1.69
VPS29-210ENST00000552130 TNFSF18Q9UNG2 199 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 HS3ST2Q9Y278 367 aa4.51□□□□□ -1.69
VPS29-210ENST00000552130 EIF4G3O43432 1585 aaKnown RBP4.51□□□□□ -1.69
VPS29-210ENST00000552130 CORTO00230 105 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 BCL2L11O43521 198 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 IGHV3-11P01762 117 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 HLA-DQB1P01920 261 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 NTF3P20783 257 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 OPRM1P35372 400 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 CXCL12P48061 93 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 PSG7Q13046 419 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 PDGFRLQ15198 375 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 OR4K5Q8NGD3 323 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 OR52R1Q8NGF1 315 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 TOMM6Q96B49 74 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 C2orf50Q96LR7 162 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 DERL3Q96Q80 235 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 TRIB3Q96RU7 358 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 TM2D3Q9BRN9 247 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 ZNF471Q9BX82 626 aaPredicted RBP4.5□□□□□ -1.69
VPS29-210ENST00000552130 KRTAP4-4Q9BYR3 166 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 HECW1Q76N89 1606 aa4.5□□□□□ -1.69
VPS29-210ENST00000552130 FMN1Q68DA7 1419 aa4.49□□□□□ -1.69
VPS29-210ENST00000552130 IGHV1OR15-9A0A0B4J2B8 117 aa4.49□□□□□ -1.69
VPS29-210ENST00000552130 EPM2AB3EWF7 344 aa4.49□□□□□ -1.69
VPS29-210ENST00000552130 INS-IGF2F8WCM5 200 aa4.49□□□□□ -1.69
VPS29-210ENST00000552130 J3QR89 54 aa4.49□□□□□ -1.69
VPS29-210ENST00000552130 DPM2O94777 84 aa4.49□□□□□ -1.69
VPS29-210ENST00000552130 IGLV1-44P01699 117 aa4.49□□□□□ -1.69
VPS29-210ENST00000552130 AMBPP02760 352 aa4.49□□□□□ -1.69
VPS29-210ENST00000552130 UCHL1P09936 223 aa4.49□□□□□ -1.69
VPS29-210ENST00000552130 INAFM2P0DMQ5 153 aa4.49□□□□□ -1.69
VPS29-210ENST00000552130 MUC1P15941 1255 aaPredicted RBP4.49□□□□□ -1.69
VPS29-210ENST00000552130 CRISP2P16562 243 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms