RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 SPINT2O43291 252 aa12.47□□□□□ -0.41
USP28-214ENST00000545540 EIF4EBP1Q13541 118 aaPredicted RBP12.47□□□□□ -0.41
USP28-214ENST00000545540 MLANAQ16655 118 aa12.47□□□□□ -0.41
USP28-214ENST00000545540 SLC35E4Q6ICL7 350 aa12.47□□□□□ -0.41
USP28-214ENST00000545540 OR1P1Q8NH06 330 aa12.47□□□□□ -0.41
USP28-214ENST00000545540 SCO2A0A1W2PP80 73 aa12.46□□□□□ -0.41
USP28-214ENST00000545540 IGHV3-48P01763 117 aa12.46□□□□□ -0.41
USP28-214ENST00000545540 GZMBP10144 247 aa12.46□□□□□ -0.41
USP28-214ENST00000545540 DUTP33316 252 aaKnown RBP12.46□□□□□ -0.41
USP28-214ENST00000545540 Q8N7P7 452 aa12.46□□□□□ -0.41
USP28-214ENST00000545540 OR2T10Q8NGZ9 312 aa12.46□□□□□ -0.41
USP28-214ENST00000545540 SRD5A3Q9H8P0 318 aa12.46□□□□□ -0.41
USP28-214ENST00000545540 HES4Q9HCC6 221 aa12.46□□□□□ -0.41
USP28-214ENST00000545540 ZZEF1O43149 2961 aa12.46□□□□□ -0.41
USP28-214ENST00000545540 IGHV1-18A0A0C4DH31 117 aa12.46□□□□□ -0.41
USP28-214ENST00000545540 M0R1B8 84 aa12.46□□□□□ -0.41
USP28-214ENST00000545540 NUBP1P53384 320 aa12.46□□□□□ -0.41
USP28-214ENST00000545540 SLC35B1P78383 322 aa12.46□□□□□ -0.41
USP28-214ENST00000545540 PDLIM3Q53GG5 364 aaPredicted RBP12.46□□□□□ -0.41
USP28-214ENST00000545540 SEPSECSQ9HD40 501 aaKnown RBP12.46□□□□□ -0.41
USP28-214ENST00000545540 CLCF1Q9UBD9 225 aa12.46□□□□□ -0.41
USP28-214ENST00000545540 PITPNC1Q9UKF7 332 aa12.46□□□□□ -0.41
USP28-214ENST00000545540 USF2Q15853 346 aaPredicted RBP12.46□□□□□ -0.42
USP28-214ENST00000545540 SMIM21Q3B7S5 101 aa12.46□□□□□ -0.42
USP28-214ENST00000545540 DMRTC2Q8IXT2 367 aaPredicted RBP12.46□□□□□ -0.42
USP28-214ENST00000545540 TMEM170AQ8WVE7 144 aa12.46□□□□□ -0.42
USP28-214ENST00000545540 TANC2Q9HCD6 1990 aa12.45□□□□□ -0.42
USP28-214ENST00000545540 IGHV2OR16-5A0A0B4J2B6 119 aa12.45□□□□□ -0.42
USP28-214ENST00000545540 AHRRA9YTQ3 701 aa12.45□□□□□ -0.42
USP28-214ENST00000545540 DEFB109BQ30KR1 87 aa12.45□□□□□ -0.42
USP28-214ENST00000545540 ZNF718Q3SXZ3 478 aa12.45□□□□□ -0.42
USP28-214ENST00000545540 TREML4Q6UXN2 200 aa12.45□□□□□ -0.42
USP28-214ENST00000545540 MRPL41Q8IXM3 137 aaKnown RBP12.45□□□□□ -0.42
USP28-214ENST00000545540 OR2V2Q96R30 315 aa12.45□□□□□ -0.42
USP28-214ENST00000545540 IER2Q9BTL4 223 aa12.45□□□□□ -0.42
USP28-214ENST00000545540 C15orf65H3BRN8 121 aa12.45□□□□□ -0.42
USP28-214ENST00000545540 HRASP01112 189 aa12.45□□□□□ -0.42
USP28-214ENST00000545540 DDTP30046 118 aa12.45□□□□□ -0.42
USP28-214ENST00000545540 INO80CQ6PI98 192 aaPredicted RBP12.45□□□□□ -0.42
USP28-214ENST00000545540 ZNF664Q8N3J9 261 aa12.45□□□□□ -0.42
USP28-214ENST00000545540 DEFB124Q8NES8 71 aa12.45□□□□□ -0.42
USP28-214ENST00000545540 TMEM242Q9NWH2 141 aa12.45□□□□□ -0.42
USP28-214ENST00000545540 FAM90A26D6RGX4 464 aa12.44□□□□□ -0.42
USP28-214ENST00000545540 RAB29O14966 203 aa12.44□□□□□ -0.42
USP28-214ENST00000545540 OR4A8P0C604 315 aa12.44□□□□□ -0.42
USP28-214ENST00000545540 IL3RAP26951 378 aa12.44□□□□□ -0.42
USP28-214ENST00000545540 MORN2Q502X0 79 aa12.44□□□□□ -0.42
USP28-214ENST00000545540 C22orf34Q6ZV56 151 aa12.44□□□□□ -0.42
USP28-214ENST00000545540 LINC01551Q86U37 167 aa12.44□□□□□ -0.42
USP28-214ENST00000545540 TMEM183AQ8IXX5 376 aa12.44□□□□□ -0.42
USP28-214ENST00000545540 SGMS2Q8NHU3 365 aa12.44□□□□□ -0.42
USP28-214ENST00000545540 MGST2Q99735 147 aa12.44□□□□□ -0.42
USP28-214ENST00000545540 DVL1O14640 695 aa12.44□□□□□ -0.42
USP28-214ENST00000545540 IGKV3-15P01624 115 aa12.44□□□□□ -0.42
USP28-214ENST00000545540 TRIP6Q15654 476 aaKnown RBP12.44□□□□□ -0.42
USP28-214ENST00000545540 RND1Q92730 232 aa12.44□□□□□ -0.42
USP28-214ENST00000545540 ELOA3CA0A087WX78 387 aaPredicted RBP12.44□□□□□ -0.42
USP28-214ENST00000545540 OR5I1Q13606 314 aa12.44□□□□□ -0.42
USP28-214ENST00000545540 LHFPL4Q7Z7J7 247 aa12.44□□□□□ -0.42
USP28-214ENST00000545540 TMEM140Q9NV12 185 aa12.44□□□□□ -0.42
USP28-214ENST00000545540 PXMP4Q9Y6I8 212 aa12.44□□□□□ -0.42
USP28-214ENST00000545540 NDUFB7P17568 137 aa12.43□□□□□ -0.42
USP28-214ENST00000545540 HLA-DRB5Q30154 266 aa12.43□□□□□ -0.42
USP28-214ENST00000545540 ACOT6Q3I5F7 207 aaPredicted RBP12.43□□□□□ -0.42
USP28-214ENST00000545540 LYG1Q8N1E2 194 aa12.43□□□□□ -0.42
USP28-214ENST00000545540 GCSAMQ8N6F7 178 aa12.43□□□□□ -0.42
USP28-214ENST00000545540 CTDSP1Q9GZU7 261 aa12.43□□□□□ -0.42
USP28-214ENST00000545540 HIPK2Q9H2X6 1198 aa12.43□□□□□ -0.42
USP28-214ENST00000545540 ZNF292O60281 2723 aa12.43□□□□□ -0.42
USP28-214ENST00000545540 M0R296 226 aa12.43□□□□□ -0.42
USP28-214ENST00000545540 MMP23AO75900 390 aa12.43□□□□□ -0.42
USP28-214ENST00000545540 PRB3Q04118 309 aaPredicted RBP12.43□□□□□ -0.42
USP28-214ENST00000545540 TAAR6Q96RI8 345 aa12.43□□□□□ -0.42
USP28-214ENST00000545540 DCHS2Q6V1P9 2916 aa12.43□□□□□ -0.42
USP28-214ENST00000545540 TMEM210A6NLX4 147 aa12.43□□□□□ -0.42
USP28-214ENST00000545540 ZNF600Q6ZNG1 722 aa12.43□□□□□ -0.42
USP28-214ENST00000545540 ATG101Q9BSB4 218 aa12.43□□□□□ -0.42
USP28-214ENST00000545540 YTHDF2Q9Y5A9 579 aaKnown RBP12.43□□□□□ -0.42
USP28-214ENST00000545540 BSNQ9UPA5 3926 aa12.43□□□□□ -0.42
USP28-214ENST00000545540 TMEM250H0YL14 139 aa12.42□□□□□ -0.42
USP28-214ENST00000545540 PRB4P10163 310 aaPredicted RBP12.42□□□□□ -0.42
USP28-214ENST00000545540 FAM216AQ8WUB2 273 aa12.42□□□□□ -0.42
USP28-214ENST00000545540 ITLN1Q8WWA0 313 aa12.42□□□□□ -0.42
USP28-214ENST00000545540 MISP3Q96FF7 219 aa12.42□□□□□ -0.42
USP28-214ENST00000545540 S1PR3Q99500 378 aa12.42□□□□□ -0.42
USP28-214ENST00000545540 CBLN1P23435 193 aa12.42□□□□□ -0.42
USP28-214ENST00000545540 OCC1Q8TAD7 63 aa12.42□□□□□ -0.42
USP28-214ENST00000545540 HSD17B10Q99714 261 aaKnown RBP12.42□□□□□ -0.42
USP28-214ENST00000545540 TIMM9Q9Y5J7 89 aa12.42□□□□□ -0.42
USP28-214ENST00000545540 TRAPPC1Q9Y5R8 145 aa12.42□□□□□ -0.42
USP28-214ENST00000545540 C17orf112F2Z3M2 114 aa12.42□□□□□ -0.42
USP28-214ENST00000545540 TSTD3H0UI37 97 aa12.42□□□□□ -0.42
USP28-214ENST00000545540 SCGB1D1O95968 90 aa12.42□□□□□ -0.42
USP28-214ENST00000545540 ATP6V1FQ16864 119 aa12.42□□□□□ -0.42
USP28-214ENST00000545540 SH3BGRL2Q9UJC5 107 aa12.42□□□□□ -0.42
USP28-214ENST00000545540 WDR83OSQ9Y284 106 aa12.42□□□□□ -0.42
USP28-214ENST00000545540 REG1BP48304 166 aa12.41□□□□□ -0.42
USP28-214ENST00000545540 OR4P4Q8NGL7 312 aa12.41□□□□□ -0.42
USP28-214ENST00000545540 C1orf159Q96HA4 380 aa12.41□□□□□ -0.42
USP28-214ENST00000545540 CIB3Q96Q77 187 aaPredicted RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms